SCN Proteipedia

Hg_chrom8_TN10mRNA_15600

Organism: Heterodera glycines Gene Locus: chr8:5154789-5160586 Feature type: polypeptide

Protein Sequence

Length: 863

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.943	1.132	0.527	0.32	1.333	1.04	0.869	1.101	1.107	1.253	0.913	1.5	1.094	0.735	1.49	1.407	1.007	0.544	1.248	0.75	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14738	—	—	1.111	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KKKR,KRSR,NRRRKRTKAERRALK	—	—	—	—	—	—	0.000	—	—	0.149	0.140	0.007	0.166	0.201	0.205	0.202	0.004	0.785	0.052

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004752	2.000	1.000	Hsc_gene_6668.t1	Hsc_gene_6668.t1	—	Q18007.3 Probable muscarinic acetylcholine receptor gar-1 [Caenorhabditis elegans]	KAI3415928.1 Serpentine type 7TM GPCR chemoreceptor Srx [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0016020	GO:0005575_0.931\|GO:0110165_0.931\|GO:0008150_0.922\|GO:0009987_0.902\|GO:0065007_0.862\|GO:0050789_0.842\|GO:0050794_0.812\|GO:0016020_0.805\|GO:0003674_0.766\|GO:0050896_0.758\|GO:0005886_0.757\|GO:0071944_0.757\|GO:0007154_0.747\|GO:0023052_0.745\|GO:0051716_0.722\|GO:0007165_0.668\|GO:0030054_0.662\|GO:0045202_0.621\|GO:0005488_0.619\|GO:0007267_0.617\|GO:0032501_0.614\|GO:0099536_0.595\|GO:0042221_0.592\|GO:0007186_0.574\|GO:1901698_0.542\|GO:0070887_0.537\|GO:0098590_0.533\|GO:1901700_0.529\|GO:1901699_0.523	IPR000276+31-55_46-245_65-86_111-133_117-133_771-841_785-809_823-849+\|IPR017452+46-841+	—	PF00001+46-245_771-841+7_transmembrane_receptor_(rhodopsin_family)	G3DSA:1.20.1070.10:FF:000365+26-258+Muscarinic_acetylcholine_receptor_gar-2	PTHR24247+31-857+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	269-747	2.000	1-268;748-863	8e9y_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.901	96630.460	9.809	30.500	26.419	10.313	51.333	48.667	15.527	10.892	47.509

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	magenta	111.060	115.740	336.299	133.421	54.124	56.129	71.283	114.897	65.240	106.248	88.673

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.310	—	-1.226	-1.337	—	—	0.931	-0.546	—	—	—	—	—

No JSON data available for plots.

Back to Browser