Hg_chrom8_TN10mRNA_15601
Organism: Heterodera glycines Gene Locus: chr8:5162901-5165216 Feature type: polypeptideProtein Sequence
Length: 459
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.988 | 0.912 | 1.03 | 0.526 | 0.726 | 1.061 | 0.467 | 1.525 | 0.871 | 1.001 | 0.495 | 1.41 | 2.179 | 1.969 | 1.512 | 1.805 | 0.607 | 0.66 | 0.0 | 0.513 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14739
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.330
|
0.243
|
0.010
|
0.796
|
0.109
|
0.173
|
0.213
|
0.042
|
0.112
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002497
|
3.000
|
1.000
|
Hsc_gene_6667.t1
|
Hsc_gene_6667.t1
|
— |
Q9Y2K5.3 R3H domain-containing protein 2 [Homo sapiens]
|
KAH7727669.1 R3H domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0003674_0.644|GO:0005488_0.609|GO:0005575_0.564|GO:0110165_0.563|GO:0097159_0.516|GO:0005622_0.515|GO:0003676_0.508|GO:0008150_0.501
|
IPR001374+76-153_93-156_95-152+|IPR036867+65-180_70-172+|IPR051937+40-451+
|
SM00393+76-153+
|
PF01424+95-152+R3H_domain
|
— |
PTHR15672+40-451+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
324-367;429-459
|
2.000
|
1-323;368-428
|
1whr_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.924
|
51002.550
|
8.193
|
10.000
|
23.747
|
12.636
|
48.148
|
51.852
|
13.725
|
10.022
|
54.466
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
45.736
|
50.748
|
32.715
|
29.302
|
20.794
|
20.405
|
190.016
|
131.267
|
1.442
|
20.797
|
12.502
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.868
|
-0.929
|
— | — | — |
3.231
|
2.582
|
0.678
|
— |
4.745
|
— | — | — |
No JSON data available for plots.