Hg_chrom8_TN10mRNA_15605
Organism: Heterodera glycines Gene Locus: chr8:5181172-5181782 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 0.716 | 0.699 | 2.122 | 1.923 | 1.972 | 0.641 | 1.538 | 0.684 | 0.312 | 0.816 | 0.905 | 1.068 | 0.592 | 1.413 | 0.769 | 1.639 | 1.049 | 1.183 | 0.905 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14743
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.807
|
0.240
|
0.019
|
0.341
|
0.116
|
0.120
|
0.059
|
0.001
|
0.036
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011958
|
1.000
|
1.000
|
Hsc_gene_6665.t1
|
Hsc_gene_6665.t1
|
— |
O27369.2 Transcription factor S [Methanothermobacter thermautotrophicus str. Delta H]
|
KAI1717352.1 transcription factor s-II (TFIIS) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003676|GO:0003899|GO:0006351|GO:0008270
|
GO:0005575_0.804|GO:0110165_0.793|GO:0008150_0.779|GO:0005622_0.723|GO:0016020_0.666|GO:0043226_0.653|GO:0043229_0.622|GO:0008152_0.617|GO:0044238_0.614|GO:0043227_0.607|GO:0006139_0.592|GO:0009987_0.589|GO:0043231_0.583|GO:0005634_0.553|GO:0031974_0.514|GO:0043233_0.514|GO:0070013_0.514|GO:0031981_0.501
|
IPR001222+87-127_89-128_90-125+|IPR012164+7-125_7-130+
|
SM00440+89-128+
|
PF01096+90-125+Transcription_factor_S-II_(TFIIS)
|
— |
PTHR11239+7-125+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-130
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
14932.580
|
5.644
|
-2.000
|
30.769
|
11.538
|
56.923
|
43.077
|
15.385
|
15.385
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
649.983
|
979.792
|
559.326
|
372.896
|
324.185
|
329.846
|
889.468
|
332.012
|
906.280
|
743.645
|
813.346
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.039
|
-1.531
|
-0.476
|
-0.233
|
— |
1.444
|
— |
1.568
|
— | — | — | — | — |
No JSON data available for plots.