SCN Proteipedia

Hg_chrom8_TN10mRNA_15607

Organism: Heterodera glycines Gene Locus: chr8:5183486-5195728 Feature type: polypeptide

Protein Sequence

Length: 2,497

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.759	0.941	0.75	0.525	1.001	0.955	0.553	0.901	1.602	1.645	0.771	1.508	2.147	0.755	1.038	1.024	0.775	0.947	1.479	1.107	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14745	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.994

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KKLHEIKDRTAAIRKRYE,KKAREIAKTALSKRKQKH,RRSREHRYVEYVLNKEKEK	12-32	0.946	—	—	—	—	0.000	—	—	0.129	0.112	0.028	0.187	0.453	0.300	0.227	0.016	0.834	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002498	1.000	3.000	Hsc_gene_6663.t1;Hsc_gene_6663.t2;Hsc_gene_6663.t3	Hsc_gene_6663.t1;Hsc_gene_6663.t2;Hsc_gene_6663.t3	—	A0A061ACU2.1 Piezo-type mechanosensitive ion channel component 1 [Caenorhabditis elegans]	KAI1714488.1 piezo non-specific cation channel, r-Ras-binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0008381\|GO:0016020	GO:0008150_0.975\|GO:0005575_0.932\|GO:0110165_0.930\|GO:0009987_0.929\|GO:0016020_0.917\|GO:0005886_0.916\|GO:0071944_0.916\|GO:0065007_0.669\|GO:0051179_0.656\|GO:0051234_0.656\|GO:0006810_0.652\|GO:0032501_0.622\|GO:0055085_0.617\|GO:0003674_0.584\|GO:0005215_0.584\|GO:0022857_0.584\|GO:0006811_0.574\|GO:0034220_0.574\|GO:0015075_0.568\|GO:0005216_0.567\|GO:0015267_0.567\|GO:0022803_0.567\|GO:0006812_0.538\|GO:0098655_0.537\|GO:0050789_0.526\|GO:0022836_0.519	IPR023298+1011-1733+\|IPR027272+15-2492+\|IPR031334+2054-2491+\|IPR031805+1261-1388+	—	PF12166+2054-2491+Piezo_non-specific_cation_channel,_R-Ras-binding_domain\|PF15917+1261-1388+Piezo	—	PTHR13167+15-2492+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1393-1538;1785-1873	3.000	1-1392;1539-1784;1874-2497	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.614	287435.380	7.553	23.500	22.107	15.218	41.770	58.230	11.974	10.132	42.932

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	4636.590	6119.453	4898.054	3194.195	2579.482	5206.872	4523.936	5509.616	7319.846	2783.345	4727.560

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.550	-1.075	-0.509	-0.340	1.027	-0.194	—	—	—	—	—	—	—

No JSON data available for plots.

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