SCN Proteipedia

Hg_chrom8_TN10mRNA_15609

Organism: Heterodera glycines Gene Locus: chr8:5201006-5203575 Feature type: polypeptide

Protein Sequence

Length: 498

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.677	1.074	1.314	0.692	1.004	1.081	0.502	1.506	1.16	1.221	1.156	1.772	1.06	0.927	1.803	1.061	0.889	0.7	0.618	0.65	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14747	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKL,RKSK,RRRLDKVQTRKKLKT,KRSIVLATTLKQREKLK,RRDEKTLVNPYIAFRRRLD,KKLPIRIRKCRKRSPKVKR	—	—	—	—	—	—	0.000	—	—	0.844	0.126	0.028	0.333	0.028	0.038	0.032	0.018	0.053	0.078

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011961	1.000	1.000	Hsc_gene_6660.t1	Hsc_gene_6660.t1	—	Q52LR7.2 Enhancer of polycomb homolog 2 [Homo sapiens]	KAF7634379.1 Enhancer of polycomb-like protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006357\|GO:0035267	GO:0008150_0.950\|GO:0005575_0.909\|GO:0110165_0.909\|GO:0009987_0.897\|GO:0005622_0.872\|GO:0043226_0.818\|GO:0043229_0.807\|GO:0050896_0.805\|GO:0065007_0.774\|GO:0051716_0.772\|GO:0050789_0.767\|GO:0050794_0.748\|GO:0006950_0.728\|GO:0008152_0.701\|GO:0043170_0.700\|GO:0033554_0.699\|GO:0044238_0.695\|GO:0043228_0.682\|GO:0006974_0.680\|GO:0043232_0.679\|GO:0032991_0.678\|GO:0019222_0.670\|GO:0048518_0.664\|GO:0006139_0.659\|GO:0090304_0.659\|GO:0048522_0.653\|GO:0060255_0.652\|GO:0080090_0.650\|GO:0009893_0.623\|GO:0019219_0.614\|GO:0010604_0.613\|GO:0048583_0.605\|GO:0045935_0.590\|GO:0003674_0.588\|GO:0048584_0.583\|GO:0007049_0.582\|GO:0016020_0.582\|GO:0006259_0.579\|GO:0080134_0.577\|GO:0051726_0.576\|GO:1902494_0.572\|GO:0005694_0.568\|GO:0006281_0.568\|GO:0006302_0.568\|GO:0006310_0.568\|GO:0051052_0.568\|GO:0051054_0.567\|GO:0000018_0.563\|GO:0000724_0.563\|GO:0000725_0.563\|GO:0006282_0.563\|GO:0010569_0.563\|GO:0045739_0.563\|GO:0045911_0.563\|GO:0080135_0.563\|GO:1905168_0.563\|GO:2000779_0.563\|GO:2000781_0.563\|GO:0005488_0.560\|GO:0140535_0.558\|GO:0000785_0.557\|GO:1990234_0.555\|GO:0000123_0.540\|GO:0031248_0.540\|GO:0035267_0.540\|GO:0043189_0.540\|GO:1902493_0.540\|GO:1902562_0.540\|GO:0043227_0.531\|GO:0043231_0.516	IPR024943+9-495+	—	—	—	PTHR14898+9-495+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-89;458-498	1.000	90-457	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.816	57341.480	9.668	23.500	32.731	9.839	54.418	45.582	19.478	13.253	46.185

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	midnightblue	1367.173	2006.602	985.369	956.151	1301.015	1023.264	1755.579	1134.917	809.941	1937.839	1454.454

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.257	-1.206	—	0.413	-0.332	0.790	—	0.772	—	—	—	—	—

No JSON data available for plots.

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