Hg_chrom8_TN10mRNA_15610
Organism: Heterodera glycines Gene Locus: chr8:5205413-5206872 Feature type: polypeptideProtein Sequence
Length: 286
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.098 | 0.813 | 1.081 | 0.603 | 0.991 | 0.628 | 1.29 | 0.524 | 1.088 | 1.465 | 0.795 | 1.028 | 1.36 | 0.672 | 0.714 | 1.349 | 0.688 | 1.166 | 0.807 | 0.617 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14748
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.772
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKTGEVAGPSEKRTKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.679
|
0.222
|
0.027
|
0.361
|
0.116
|
0.085
|
0.102
|
0.017
|
0.155
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004754
|
3.000
|
0.000
|
0.000
|
— | — | — |
XP_055500471.1 superoxide dismutase [Cu-Zn]-like isoform X3 [Leucoraja erinacea]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006801|GO:0046872
|
GO:0008150_0.921|GO:0005575_0.886|GO:0110165_0.879|GO:0003674_0.848|GO:0009987_0.845|GO:0016020_0.789|GO:0005622_0.786|GO:0005737_0.786|GO:0008152_0.771|GO:0050896_0.768|GO:0065007_0.756|GO:0044237_0.744|GO:0050789_0.744|GO:0003824_0.740|GO:0009058_0.735|GO:0051716_0.733|GO:0050794_0.732|GO:0043226_0.722|GO:0006950_0.720|GO:0044249_0.717|GO:0042221_0.715|GO:0043229_0.715|GO:0043170_0.714|GO:0009059_0.702|GO:0043227_0.702|GO:0009628_0.701|GO:0048519_0.701|GO:0010467_0.696|GO:0043231_0.695|GO:0019222_0.694|GO:1901700_0.694|GO:0031323_0.693|GO:0044419_0.693|GO:0048523_0.692|GO:0033554_0.690|GO:0060255_0.689|GO:0070887_0.688|GO:0009605_0.687|GO:0009607_0.687|GO:0043207_0.687|GO:0051707_0.687|GO:0009889_0.684|GO:0010556_0.684|GO:0031326_0.684|GO:0010468_0.682|GO:0006952_0.681|GO:0009892_0.680|GO:0010038_0.680|GO:0006979_0.679|GO:0009314_0.679|GO:0009416_0.679|GO:0009636_0.679|GO:0098542_0.679|GO:0010605_0.678|GO:0071214_0.678|GO:0104004_0.678|GO:1901701_0.678|GO:0006970_0.677|GO:0016491_0.677|GO:0031324_0.677|GO:0062197_0.677|GO:0009617_0.676|GO:0009890_0.676|GO:0031327_0.676|GO:0098754_0.676|GO:0009651_0.675|GO:0010558_0.675|GO:0034599_0.675|GO:0042742_0.675|GO:0010608_0.674|GO:0010629_0.674|GO:0097237_0.674|GO:1990748_0.673|GO:0000302_0.670|GO:0000303_0.670|GO:0000305_0.670|GO:0006801_0.670|GO:0009411_0.670|GO:0009642_0.670|GO:0009743_0.670|GO:0009744_0.670|GO:0010039_0.670|GO:0010193_0.670|GO:0010224_0.670|GO:0016441_0.670|GO:0019430_0.670|GO:0031047_0.670|GO:0034285_0.670|GO:0034614_0.670|GO:0034644_0.670|GO:0035194_0.670|GO:0035195_0.670|GO:0046688_0.670|GO:0071248_0.670|GO:0071280_0.670|GO:0071322_0.670|GO:0071324_0.670|GO:0071329_0.670|GO:0071450_0.670|GO:0071451_0.670|GO:0071457_0.670|GO:0071470_0.670|GO:0071472_0.670|GO:0071478_0.670|GO:0071482_0.670|GO:0071484_0.670|GO:0071493_0.670|GO:0072593_0.670|GO:0098869_0.670|GO:0004784_0.650|GO:0016209_0.650|GO:0016721_0.650|GO:0005829_0.618|GO:0005634_0.577
|
IPR036423+132-273_153-275+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-286
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
30369.540
|
4.679
|
-7.500
|
21.678
|
9.091
|
41.259
|
58.741
|
9.790
|
11.888
|
56.294
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
80.710
|
36.698
|
97.560
|
51.239
|
46.578
|
32.937
|
18.638
|
64.873
|
29.158
|
200.540
|
127.091
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.180
|
— |
-0.821
|
— |
-0.486
|
-0.814
|
0.874
|
-1.660
|
— | — | — | — | — |
No JSON data available for plots.