Hg_chrom8_TN10mRNA_15611
Organism: Heterodera glycines Gene Locus: chr8:5214078-5217599 Feature type: polypeptideProtein Sequence
Length: 616
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.868 | 0.708 | 0.448 | 1.055 | 0.541 | 0.85 | 1.136 | 1.082 | 1.426 | 0.221 | 0.859 | 1.623 | 1.249 | 1.524 | 1.461 | 1.091 | 0.713 | 1.499 | 0.716 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14749
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRRRR
|
51-71
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.085
|
0.046
|
0.020
|
0.311
|
0.676
|
0.353
|
0.536
|
0.005
|
0.531
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011962
|
1.000
|
1.000
|
Hsc_gene_6659.t1
|
Hsc_gene_6659.t1
|
— |
P34298.2 Dual oxidase maturation factor 1 [Caenorhabditis elegans]
|
KHN82618.1 DUOXA-like protein C06E1.3 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005789|GO:0015031|GO:0016020
|
GO:0008150_0.968|GO:0005575_0.867|GO:0110165_0.867|GO:0016020_0.833|GO:0005886_0.819|GO:0071944_0.819|GO:0009987_0.671|GO:0065007_0.626|GO:0050789_0.608|GO:0050794_0.582|GO:0032501_0.529
|
IPR018469+1-375_18-124_206-371+
|
— |
PF10204+18-124_206-371+Dual_oxidase_maturation_factor
|
— |
PTHR31158+1-375+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
469-616
|
1.000
|
1-468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.782
|
67981.890
|
6.393
|
-1.000
|
21.429
|
12.500
|
44.156
|
55.844
|
11.201
|
10.227
|
53.247
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
871.312
|
456.469
|
806.740
|
1213.610
|
1513.587
|
3138.688
|
491.616
|
1548.866
|
119.780
|
283.567
|
213.372
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
1.274
|
0.697
|
0.287
|
1.067
|
-2.665
|
-1.129
|
-1.512
|
— |
3.506
|
— | — | — |
No JSON data available for plots.