Hg_chrom8_TN10mRNA_15613
Organism: Heterodera glycines Gene Locus: chr8:5233666-5234427 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.55 | 0.485 | 0.46 | 0.111 | 0.684 | 0.714 | 2.667 | 0.593 | 1.261 | 0.505 | 1.569 | 0.741 | 1.667 | 2.313 | 1.714 | 1.639 | 0.404 | 0.0 | 0.588 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14751
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.953
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
28-68
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.478
|
0.252
|
0.026
|
0.579
|
0.036
|
0.031
|
0.045
|
0.041
|
0.162
|
0.290
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000151
|
4.000
|
9.000
|
Hsc_gene_15400.t1;Hsc_gene_259.t1;Hsc_gene_5887.t1;Hsc_gene_5897.t1;Hsc_gene_5901.t1;Hsc_gene_5903.t1;Hsc_gene_5976.t1;Hsc_gene_8492.t1;Hsc_gene_8493.t1
|
— | — |
P53021.2 Major sperm protein 1 [Globodera rostochiensis]
|
ARR95827.1 major sperm protein [Heterodera schachtii];ARR95832.1 major sperm protein [Heterodera glycines];ARR95828.1 major sperm protein [Heterodera schachtii];ARR95829.1 major sperm protein [Heterodera schachtii];ARR95831.1 major sperm protein [Heterodera schachtii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.811|GO:0005488_0.809|GO:0005515_0.742|GO:0042802_0.663
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-150
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
16538.750
|
12.258
|
21.000
|
23.333
|
10.000
|
54.667
|
45.333
|
20.000
|
3.333
|
57.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
22.445
|
6.820
|
20.318
|
35.021
|
24.082
|
11.834
|
47.768
|
8.928
|
4.146
|
37.050
|
22.948
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.342
|
2.224
|
0.896
|
-0.570
|
-1.013
|
2.024
|
— |
2.562
|
— | — | — | — | — |
No JSON data available for plots.