SCN Proteipedia

Hg_chrom8_TN10mRNA_15615

Organism: Heterodera glycines Gene Locus: chr8:5240115-5241499 Feature type: polypeptide

Protein Sequence

Length: 278

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.502	1.004	1.046	0.248	1.259	0.83	0.728	2.518	0.959	1.312	1.145	2.116	1.099	1.453	1.248	1.079	0.708	0.927	0.277	0.529	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14753	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-Not_Clustered	0.597

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	KRARSKLDKAVDKVKKL,KKLLVPSRDGIDELKRKQL	—	—	—	—	—	—	0.000	—	—	0.768	0.162	0.004	0.510	0.091	0.095	0.115	0.015	0.046	0.037

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011964	1.000	1.000	Hsc_gene_6654.t1	Hsc_gene_6654.t1	—	G5EFF1.1 RNA-binding protein asd-2 [Caenorhabditis elegans]	KAI3415915.1 RNA-binding protein asd-2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0008150_0.883\|GO:0009987_0.816\|GO:0005575_0.754\|GO:0110165_0.754\|GO:0005622_0.736\|GO:0003674_0.715\|GO:0005488_0.707\|GO:0043226_0.698\|GO:0043229_0.684\|GO:0065007_0.680\|GO:0050789_0.671\|GO:0016020_0.646\|GO:0050794_0.623\|GO:0008152_0.618\|GO:0044238_0.618\|GO:0009058_0.615\|GO:0043170_0.614\|GO:0009059_0.602\|GO:0010467_0.602\|GO:0044237_0.602\|GO:0044249_0.602\|GO:0097159_0.601\|GO:0003676_0.598\|GO:0006139_0.597\|GO:0043227_0.593\|GO:0016070_0.590\|GO:0090304_0.590\|GO:0043231_0.586\|GO:0019222_0.576\|GO:0005634_0.574\|GO:0080090_0.565\|GO:0031323_0.559\|GO:0009889_0.550\|GO:0060255_0.548\|GO:0031326_0.537\|GO:0010468_0.530\|GO:0010556_0.530\|GO:0003723_0.526\|GO:0032502_0.522\|GO:0019219_0.515\|GO:0051252_0.512	IPR004087+62-162+\|IPR004088+79-106+\|IPR032377+2-47+\|IPR036612+56-192_64-187+\|IPR045071+8-250+	SM00322+62-162+	PF00013+79-106+KH_domain\|PF16544+2-47+Homodimerisation_region_of_STAR_domain_protein	G3DSA:3.30.1370.10:FF:000028+53-195+protein_quaking_isoform_X2	PTHR11208+8-250+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	177-278	1.000	1-176	4jvh_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.811	31501.990	8.051	8.000	32.014	11.151	51.439	48.561	18.705	13.309	46.763

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	lightyellow	grey	705.922	23.619	40.077	73.792	304.553	1408.653	3591.606	733.847	0.000	772.352	441.344

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.530	1.508	0.991	2.015	2.223	1.362	-1.057	2.439	-10.398	7.062	—	—	—

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