SCN Proteipedia

Hg_chrom8_TN10mRNA_15616

Organism: Heterodera glycines Gene Locus: chr8:5242473-5245860 Feature type: polypeptide

Protein Sequence

Length: 729

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.766	1.531	1.023	0.237	1.006	1.407	0.735	1.646	1.189	0.982	1.06	1.614	0.953	0.765	1.54	1.195	1.079	0.624	0.422	0.767	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14754	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-Not_Clustered	0.501

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	PKPS	—	—	—	—	—	—	0.000	—	—	0.465	0.177	0.012	0.646	0.115	0.107	0.107	0.067	0.331	0.041

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011965	1.000	1.000	Hsc_gene_6653.t1	Hsc_gene_6653.t1	—	Q11179.2 Mitogen-activated protein kinase 15 [Caenorhabditis elegans]	KAI3415914.1 Mitogen-activated protein kinase 15 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004707\|GO:0005524\|GO:0006468	GO:0008150_0.979\|GO:0009987_0.919\|GO:0065007_0.904\|GO:0050789_0.901\|GO:0005575_0.880\|GO:0110165_0.880\|GO:0050794_0.865\|GO:0005622_0.824\|GO:0050896_0.778\|GO:0051716_0.684\|GO:0003674_0.674\|GO:0016020_0.668\|GO:0003824_0.657\|GO:0140096_0.657\|GO:0043226_0.625\|GO:0016740_0.611\|GO:0016772_0.609\|GO:0004672_0.607\|GO:0016301_0.607\|GO:0016773_0.607\|GO:0043229_0.607\|GO:0023052_0.593\|GO:0007154_0.592\|GO:0048518_0.592\|GO:0071840_0.588\|GO:0016043_0.582\|GO:0007165_0.576\|GO:0043227_0.560\|GO:0005737_0.523\|GO:0006950_0.522\|GO:0004674_0.517	IPR000719+13-306+\|IPR003527+48-149+\|IPR008271+133-145+\|IPR011009+7-313+\|IPR017441+19-42+\|IPR050117+9-354+	SM00220+13-306+	PF00069+13-306+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000238+95-324+Mitogen-activated_protein_kinase\|G3DSA:3.30.200.20:FF:000166+11-94+Mitogen-activated_protein_kinase	PTHR24055+9-354+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	357-729	1.000	1-356	6v6a_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.903	82447.640	9.984	33.000	29.492	9.877	56.516	43.484	17.833	11.660	48.697

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	saddlebrown	957.500	472.917	708.069	471.684	666.781	485.667	1296.845	464.341	199.232	2327.276	1415.257

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.351	-0.141	-0.476	0.468	-0.444	1.428	—	1.624	-3.637	—	—	—	—

No JSON data available for plots.

Back to Browser