Hg_chrom8_TN10mRNA_15617
Organism: Heterodera glycines Gene Locus: chr8:5246137-5247640 Feature type: polypeptideProtein Sequence
Length: 253
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.011 | 0.552 | 1.006 | 0.409 | 1.515 | 1.216 | 0.565 | 1.581 | 1.318 | 1.015 | 1.437 | 1.86 | 1.427 | 1.596 | 0.968 | 0.903 | 0.842 | 0.659 | 0.304 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14755
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.501
|
0.076
|
0.016
|
0.606
|
0.082
|
0.223
|
0.106
|
0.016
|
0.212
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011966
|
1.000
|
1.000
|
Hsc_gene_6652.t1
|
Hsc_gene_6652.t1
|
— |
P53806.2 Calcipressin-like protein [Caenorhabditis elegans]
|
KAI1717140.1 calcipressin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0019722
|
GO:0008150_0.887|GO:0005575_0.851|GO:0110165_0.851|GO:0005622_0.818|GO:0009987_0.749|GO:0065007_0.710|GO:0050789_0.706|GO:0050794_0.685|GO:0050896_0.645|GO:0003674_0.611|GO:0005488_0.569|GO:0051716_0.544|GO:0007154_0.514|GO:0023052_0.514|GO:0005515_0.511
|
IPR006931+25-247_52-199+|IPR012677+37-145+|IPR035979+37-147+
|
— |
PF04847+52-199+Calcipressin
|
— |
PTHR10300+25-247+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-37;190-253
|
1.000
|
38-189
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.654
|
28260.430
|
7.164
|
3.000
|
32.016
|
8.696
|
50.593
|
49.407
|
17.391
|
14.625
|
46.640
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
693.382
|
1090.964
|
704.857
|
500.195
|
488.468
|
658.693
|
808.597
|
812.652
|
590.984
|
691.149
|
648.221
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.859
|
-1.262
|
-0.387
|
— |
0.446
|
0.306
|
— | — | — | — | — | — | — |
No JSON data available for plots.