Hg_chrom8_TN10mRNA_15618
Organism: Heterodera glycines Gene Locus: chr8:5249360-5252299 Feature type: polypeptideProtein Sequence
Length: 666
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.908 | 1.641 | 0.819 | 0.57 | 0.876 | 1.348 | 0.894 | 1.802 | 0.467 | 1.217 | 0.546 | 1.237 | 1.21 | 0.895 | 1.532 | 1.63 | 0.862 | 0.546 | 1.271 | 0.618 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14756
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.942
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RGRRRRR
|
39-59
|
0.991
|
51-71
|
0.995
|
— | — |
0.000
|
— | — |
0.338
|
0.307
|
0.010
|
0.574
|
0.121
|
0.152
|
0.259
|
0.083
|
0.345
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004755
|
1.000
|
2.000
|
Hsc_gene_6651.t1;Hsc_gene_6651.t2
|
Hsc_gene_6651.t2
|
— |
Q22695.2 Cyclin-dependent kinase 5 activator 1 [Caenorhabditis elegans]
|
KAH7722586.1 CDKA-1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016533|GO:0061575
|
GO:0008150_0.963|GO:0009987_0.915|GO:0065007_0.909|GO:0050789_0.896|GO:0050794_0.885|GO:0005575_0.843|GO:0110165_0.841|GO:0003674_0.752|GO:0005488_0.699|GO:0005622_0.685|GO:0005515_0.659|GO:0016020_0.617|GO:0016043_0.571|GO:0071840_0.571|GO:0005737_0.562|GO:0071944_0.517
|
IPR004944+251-662_494-659+|IPR036915+507-658+
|
— |
PF03261+494-659+Cyclin-dependent_kinase_5_activator_protein
|
— |
PTHR23401+251-662+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-475
|
1.000
|
476-666
|
1unl_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.941
|
74055.170
|
8.791
|
21.000
|
24.474
|
11.712
|
53.453
|
46.547
|
14.715
|
9.760
|
53.453
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
742.770
|
1683.813
|
1638.758
|
728.022
|
236.077
|
213.825
|
237.978
|
974.983
|
216.391
|
944.777
|
632.612
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.268
|
-1.347
|
-1.062
|
-1.655
|
— | — |
2.092
|
-1.895
|
— | — | — | — | — |
No JSON data available for plots.