SCN Proteipedia

Hg_chrom8_TN10mRNA_15619

Organism: Heterodera glycines Gene Locus: chr8:5253680-5258160 Feature type: polypeptide

Protein Sequence

Length: 982

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.983	0.782	0.833	0.386	1.68	2.011	0.546	1.273	1.086	1.583	1.034	0.958	0.877	0.45	1.122	1.164	0.901	0.818	0.392	0.539	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14757	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRSR,RKSK	31-53	0.998	—	—	—	—	0.000	—	—	0.301	0.107	0.004	0.543	0.112	0.256	0.253	0.013	0.284	0.108

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011967	1.000	1.000	Hsc_gene_6650.t1	Hsc_gene_6650.t1	—	Q02328.3 Huntington interacting protein related 1 [Caenorhabditis elegans]	KAI3415911.1 ILWEQ [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003779\|GO:0005543\|GO:0006897\|GO:0030276	GO:0008150_0.949\|GO:0005575_0.932\|GO:0110165_0.931\|GO:0009987_0.915\|GO:0051179_0.801\|GO:0065007_0.786\|GO:0051234_0.777\|GO:0006810_0.773\|GO:0050789_0.765\|GO:0005622_0.640\|GO:0016043_0.627\|GO:0071840_0.627\|GO:0043226_0.588\|GO:0016020_0.582\|GO:0006996_0.570\|GO:0050794_0.570\|GO:0043229_0.565\|GO:0007154_0.561\|GO:0023052_0.554\|GO:0071944_0.543\|GO:0051641_0.542\|GO:0005737_0.534\|GO:0005886_0.515	IPR002558+724-966_767-966_815-964+\|IPR008942+3-127_14-126+\|IPR011417+12-276+\|IPR013809+2-131_8-131+\|IPR030224+3-975+\|IPR035964+728-917+	SM00273+8-131+\|SM00307+767-966+	PF01608+815-964+I/LWEQ_domain\|PF07651+12-276+ANTH_domain	G3DSA:1.20.1410.10:FF:000006+725-925+Huntingtin_interacting_protein\|G3DSA:1.25.40.90:FF:000012+1-128+Huntingtin_interacting_protein_1-related	PTHR10407+3-975+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	280-518;964-982	2.000	1-279;519-963	1r0d_I	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.608	110551.060	5.822	-10.500	29.532	8.045	54.379	45.621	14.868	14.664	43.483

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2026.332	5346.226	2671.962	2051.925	1700.838	1847.355	3102.845	2071.977	1508.542	686.374	1038.732

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.230	-1.519	-0.272	-0.302	—	0.759	—	0.726	—	—	—	—	—

No JSON data available for plots.

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