Hg_chrom8_TN10mRNA_15620
Organism: Heterodera glycines Gene Locus: chr8:5258525-5263760 Feature type: polypeptideProtein Sequence
Length: 1,008
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 1.269 | 0.83 | 0.205 | 2.629 | 1.45 | 0.413 | 0.794 | 0.97 | 1.434 | 1.187 | 1.459 | 0.579 | 0.343 | 1.235 | 1.276 | 0.976 | 0.571 | 0.382 | 0.292 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14758
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole|golgi_apparatus
|
— |
KRVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.243
|
0.157
|
0.024
|
0.666
|
0.310
|
0.591
|
0.838
|
0.128
|
0.119
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011968
|
1.000
|
1.000
|
Hsc_gene_6649.t1
|
Hsc_gene_6649.t1
|
— | — |
KAI1717114.1 thyroid receptor-interacting protein 11 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.959|GO:0005575_0.957|GO:0110165_0.952|GO:0005622_0.941|GO:0009987_0.930|GO:0065007_0.901|GO:0043226_0.893|GO:0050789_0.888|GO:0016020_0.887|GO:0050794_0.872|GO:0043229_0.870|GO:0016043_0.852|GO:0071840_0.852|GO:0003674_0.842|GO:0005488_0.842|GO:0005515_0.838|GO:0051179_0.825|GO:0005737_0.814|GO:0043227_0.813|GO:0051641_0.803|GO:0006996_0.800|GO:0051234_0.794|GO:0032502_0.793|GO:0048856_0.793|GO:0008152_0.790|GO:0019222_0.790|GO:0032501_0.788|GO:0048518_0.787|GO:0006810_0.785|GO:0043170_0.781|GO:0031323_0.778|GO:0044237_0.778|GO:0043231_0.777|GO:0048522_0.776|GO:0044238_0.773|GO:0060255_0.773|GO:0080090_0.773|GO:0051649_0.767|GO:0006139_0.765|GO:0090304_0.765|GO:0009058_0.761|GO:0009059_0.761|GO:0010467_0.761|GO:0044249_0.761|GO:0007275_0.758|GO:0009889_0.754|GO:0031326_0.754|GO:0034654_0.752|GO:0010468_0.750|GO:0010556_0.750|GO:0016070_0.750|GO:0141187_0.750|GO:0005886_0.748|GO:0071944_0.748|GO:0048731_0.746|GO:0009893_0.745|GO:0032774_0.745|GO:0010604_0.738|GO:0031325_0.737|GO:0016192_0.734|GO:0019219_0.734|GO:0009891_0.732|GO:0031328_0.732|GO:0051252_0.727|GO:0010557_0.726|GO:0006351_0.725|GO:0006355_0.721|GO:2001141_0.721|GO:0051640_0.719|GO:0048513_0.714|GO:0051656_0.714|GO:0006366_0.710|GO:0045935_0.709|GO:0051254_0.705|GO:1902680_0.698|GO:0009888_0.696|GO:0045893_0.696|GO:0051648_0.694|GO:0051650_0.694|GO:0006903_0.689|GO:0010256_0.681|GO:0060090_0.677|GO:0030674_0.676|GO:0140110_0.675|GO:0001501_0.670|GO:0007030_0.670|GO:0051216_0.670|GO:0061448_0.670|GO:0090161_0.670|GO:0099022_0.670|GO:0099041_0.670|GO:0003712_0.666|GO:0003713_0.663|GO:0005773_0.613|GO:0012505_0.611|GO:0031982_0.588|GO:0031090_0.574|GO:0097708_0.566|GO:0031410_0.565|GO:0098588_0.564|GO:0005794_0.554|GO:0000139_0.540|GO:0005793_0.540|GO:0030133_0.540
|
IPR000237+869-918+
|
— | — | — |
PTHR18921+2-991+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
106-154;312-615;661-803;972-1008
|
4.000
|
1-105;155-311;616-660;804-971
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
114724.600
|
4.561
|
-57.000
|
35.813
|
5.159
|
61.806
|
38.194
|
15.476
|
20.337
|
42.063
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3940.864
|
8123.416
|
2330.873
|
1877.045
|
2084.224
|
1904.203
|
2605.948
|
3006.173
|
4648.501
|
5530.446
|
5152.470
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.031
|
-2.251
|
-0.204
|
0.119
|
— |
0.464
|
0.554
|
— | — |
-1.150
|
— | — | — |
No JSON data available for plots.