Hg_chrom8_TN10mRNA_15623
Organism: Heterodera glycines Gene Locus: chr8:5279818-5282252 Feature type: polypeptideProtein Sequence
Length: 493
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.637 | 1.132 | 0.959 | 0.769 | 0.98 | 1.248 | 0.58 | 1.42 | 1.442 | 1.042 | 0.676 | 1.551 | 1.803 | 1.248 | 2.111 | 0.869 | 0.532 | 0.861 | 0.936 | 0.835 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14761
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.859
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRFKLHNKNVEGDKDRIR
|
10-30
|
0.945
|
— | — | — | — |
0.000
|
— | — |
0.391
|
0.137
|
0.005
|
0.688
|
0.063
|
0.080
|
0.077
|
0.010
|
0.325
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011970
|
1.000
|
1.000
|
Hsc_gene_6645.t1
|
Hsc_gene_6645.t1
|
— |
O01767.1 Inactive protein-tyrosine phosphatase egg-4 [Caenorhabditis elegans]
|
KAI1718644.1 protein-tyrosine phosphatase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004725|GO:0006470|GO:0016311
|
GO:0008150_0.925|GO:0009987_0.863|GO:0005575_0.835|GO:0110165_0.829|GO:0003674_0.823|GO:0016020_0.685|GO:0005622_0.677|GO:0065007_0.669|GO:0050789_0.657|GO:0050794_0.627|GO:0032502_0.618|GO:0043226_0.609|GO:0048856_0.607|GO:0005488_0.599|GO:0043229_0.558|GO:0005515_0.540|GO:0071944_0.533|GO:0043227_0.526|GO:0071840_0.517|GO:0016043_0.510|GO:0048869_0.503|GO:0030154_0.502
|
IPR000242+124-382_125-380_150-378_181-188_197-217_313-331_363-373+|IPR000387+295-371+|IPR003595+278-379+|IPR029021+114-384_120-383+|IPR052782+123-381+
|
SM00194+124-382+|SM00404+278-379+
|
PF00102+150-378+Protein-tyrosine_phosphatase
|
— |
PTHR46163+123-381+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-493
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
57548.100
|
9.781
|
25.000
|
28.803
|
13.387
|
47.870
|
52.130
|
17.647
|
11.156
|
44.219
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
769.257
|
49.042
|
105.762
|
99.457
|
308.193
|
1158.167
|
3518.555
|
1064.940
|
36.228
|
974.284
|
572.260
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
0.884
|
— |
1.601
|
1.923
|
1.614
|
— |
1.870
|
-4.861
|
— | — | — | — |
No JSON data available for plots.