SCN Proteipedia

Hg_chrom8_TN10mRNA_15624

Organism: Heterodera glycines Gene Locus: chr8:5283301-5283946 Feature type: polypeptide

Protein Sequence

Length: 154

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.755	2.416	0.354	1.343	1.082	1.499	0.309	1.299	0.144	1.404	0.689	3.056	1.984	0.624	1.06	1.484	1.065	0.492	0.0	0.955	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14762	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	36-58	0.906	—	—	—	—	0.000	—	—	0.607	0.242	0.007	0.521	0.068	0.077	0.045	0.105	0.041	0.059

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011971	1.000	1.000	Hsc_gene_6644.t1	Hsc_gene_6644.t1	—	—	KAI3415903.1 hypothetical protein GPALN_005467 [Globodera pallida]	PTX07168	0.120

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0046872	GO:0008150_0.946\|GO:0065007_0.873\|GO:0050789_0.869\|GO:0009987_0.864\|GO:0050794_0.864\|GO:0005575_0.789\|GO:0110165_0.782\|GO:0008152_0.778\|GO:0019222_0.778\|GO:0031323_0.776\|GO:0044237_0.776\|GO:0043170_0.765\|GO:0060255_0.764\|GO:0005622_0.758\|GO:0009058_0.751\|GO:0009059_0.751\|GO:0010467_0.751\|GO:0044249_0.751\|GO:0009889_0.745\|GO:0031326_0.745\|GO:0010468_0.742\|GO:0010556_0.742\|GO:0044238_0.738\|GO:0006139_0.723\|GO:0090304_0.723\|GO:0016070_0.711\|GO:0080090_0.710\|GO:0048519_0.692\|GO:0003674_0.673\|GO:0048523_0.673\|GO:0005488_0.672\|GO:0048518_0.639\|GO:0019219_0.624\|GO:0051252_0.622\|GO:0009892_0.619\|GO:0031324_0.611\|GO:0010605_0.610\|GO:0009890_0.601\|GO:0010558_0.601\|GO:0031327_0.601\|GO:0009056_0.600\|GO:0009057_0.596\|GO:0009893_0.588\|GO:0010629_0.586\|GO:0016071_0.583\|GO:0034655_0.583\|GO:0141188_0.583\|GO:0006401_0.581\|GO:0006402_0.580\|GO:0010604_0.580\|GO:0005737_0.565\|GO:0043226_0.556\|GO:0097159_0.556\|GO:0003676_0.553\|GO:0016020_0.550\|GO:0043229_0.550\|GO:0045935_0.541\|GO:0051254_0.537\|GO:0043227_0.534\|GO:0010608_0.532\|GO:0043231_0.518\|GO:0003723_0.515\|GO:0065008_0.513\|GO:0003729_0.509	IPR000571+56-83_56-84_57-82+\|IPR036855+54-88+	SM00356+56-83+	PF00642+57-82+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)	G3DSA:4.10.1000.10:FF:000003+51-88+Zinc_finger_CCCH_domain-containing_protein	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-154	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.876	17680.010	7.961	4.000	20.779	12.987	53.896	46.104	12.338	8.442	48.701

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	black	359.496	32.450	87.839	86.876	171.465	681.564	243.553	778.806	0.000	791.837	452.478

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.203	1.284	—	0.950	2.005	-1.474	—	-1.530	-10.433	7.298	—	—	—

No JSON data available for plots.

Back to Browser