Hg_chrom8_TN10mRNA_15625
Organism: Heterodera glycines Gene Locus: chr8:5284260-5288302 Feature type: polypeptideProtein Sequence
Length: 570
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 2.081 | 1.244 | 0.726 | 0.906 | 1.215 | 0.543 | 1.579 | 0.936 | 1.067 | 0.957 | 1.858 | 0.828 | 1.012 | 1.719 | 1.053 | 0.805 | 0.665 | 0.81 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14763
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.650
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSR,PKPS,PPPKRGK,RKLADQTAMAAASFRHKKW
|
— | — | — | — | — | — |
0.000
|
— | — |
0.887
|
0.113
|
0.022
|
0.268
|
0.034
|
0.034
|
0.038
|
0.029
|
0.042
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011972
|
1.000
|
1.000
|
Hsc_gene_6643.t1
|
Hsc_gene_6643.t1
|
— | — |
KAI1711787.1 dynactin 4 [Ditylenchus destructor]
|
WP_216260788
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.893|GO:0110165_0.893|GO:0005622_0.866|GO:0043226_0.820|GO:0043229_0.817|GO:0016020_0.799|GO:0043227_0.767|GO:0005634_0.749|GO:0043231_0.749|GO:0005737_0.705|GO:0071944_0.629|GO:0005886_0.618|GO:0042995_0.571|GO:0098590_0.570|GO:0120025_0.570|GO:0043005_0.558
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
270-570
|
1.000
|
1-269
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
65479.650
|
9.249
|
23.000
|
30.175
|
9.825
|
56.140
|
43.860
|
17.895
|
12.281
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
2278.568
|
5450.346
|
1699.983
|
1355.670
|
1160.733
|
1041.434
|
1993.102
|
2367.088
|
2392.919
|
2523.412
|
2467.486
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.911
|
-2.144
|
-0.217
|
-0.256
|
— |
0.948
|
1.088
|
— | — | — | — | — | — |
No JSON data available for plots.