SCN Proteipedia

Hg_chrom8_TN10mRNA_15626

Organism: Heterodera glycines Gene Locus: chr8:5292872-5297930 Feature type: polypeptide

Protein Sequence

Length: 900

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.749	1.137	0.909	1.188	0.889	1.709	1.005	1.278	1.086	1.216	0.589	1.895	1.358	0.726	0.816	1.365	0.911	0.825	0.342	0.752	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14764	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	18-ppJ2_pJ2_J3_J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KRQK	—	—	—	—	—	—	0.000	—	—	0.465	0.106	0.010	0.616	0.095	0.383	0.234	0.030	0.207	0.049

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011973	1.000	1.000	Hsc_gene_6642.t1	Hsc_gene_6642.t1	—	P34611.1 B-box type zinc finger protein ncl-1 [Caenorhabditis elegans]	KAI1717187.1 NHL repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0008270	GO:0008150_0.933\|GO:0005575_0.849\|GO:0110165_0.849\|GO:0009987_0.802\|GO:0065007_0.777\|GO:0003674_0.764\|GO:0050789_0.761\|GO:0005622_0.746\|GO:0050794_0.703\|GO:0008152_0.685\|GO:0043170_0.634\|GO:0044238_0.614\|GO:0044237_0.594\|GO:0005737_0.588\|GO:0009058_0.588\|GO:0044249_0.567\|GO:0009059_0.560\|GO:0019222_0.557\|GO:0010467_0.553\|GO:0048519_0.553\|GO:0031323_0.541\|GO:0060255_0.534\|GO:0019538_0.529\|GO:0009889_0.516\|GO:0031326_0.516\|GO:0010468_0.514\|GO:0010556_0.514	IPR000315+199-246_202-245_269-309+\|IPR001258+635-678_648-675_682-727_728-769_739-766_770-812_813-856_825-852+\|IPR001841+97-143_97-144+\|IPR003649+316-442+\|IPR011042+622-900+\|IPR013083+86-171+\|IPR017907+112-121+\|IPR047153+93-817+	SM00184+97-143+\|SM00336+199-246_269-309+\|SM00502+316-442+	PF00643+202-245+B-box_zinc_finger\|PF01436+648-675_739-766_825-852+NHL_repeat\|PF13923+96-126+Zinc_finger,_C3HC4_type_(RING_finger)	G3DSA:2.120.10.30:FF:000107+642-899+Uncharacterized_protein	PTHR25462+93-817+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-900	4zlr_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.688	98648.490	5.669	-10.500	20.778	10.444	47.444	52.556	10.444	10.333	52.556

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	red	5501.434	3157.561	6745.621	6070.077	5481.067	6406.900	4898.063	7357.896	3962.326	6053.084	5157.045

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.867	0.806	—	-0.179	0.240	-0.378	—	-0.446	—	—	—	—	—

No JSON data available for plots.

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