Hg_chrom8_TN10mRNA_15628
Organism: Heterodera glycines Gene Locus: chr8:5318674-5322523 Feature type: polypeptideProtein Sequence
Length: 731
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.891 | 1.113 | 0.597 | 0.66 | 0.844 | 1.158 | 0.749 | 0.889 | 1.155 | 1.516 | 0.663 | 1.851 | 1.672 | 0.658 | 1.228 | 1.388 | 0.83 | 0.995 | 0.842 | 0.845 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14766
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.948
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — |
46-68
|
0.999
|
— | — |
0.000
|
— | — |
0.071
|
0.325
|
0.054
|
0.126
|
0.448
|
0.524
|
0.378
|
0.063
|
0.790
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011975
|
1.000
|
1.000
|
Hsc_gene_6636.t1
|
Hsc_gene_6636.t1
|
— |
Q11180.3 ABC transporter ATP-binding protein/permease wht-1 [Caenorhabditis elegans]
|
KAF7638719.1 ABC transporter domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016020|GO:0016887|GO:0140359
|
GO:0008150_0.894|GO:0005575_0.823|GO:0110165_0.822|GO:0009987_0.791|GO:0016020_0.756|GO:0051179_0.684|GO:0006810_0.676|GO:0051234_0.676|GO:0071944_0.630|GO:0005886_0.609|GO:0003674_0.589|GO:0005622_0.507
|
IPR003439+77-323_101-250+|IPR003593+105-300+|IPR013525+440-651+|IPR017871+222-236+|IPR027417+77-368_92-311+|IPR050352+51-720+
|
SM00382+105-300+
|
PF00005+101-250+ABC_transporter|PF01061+440-651+ABC-2_type_transporter
|
— |
PTHR48041+51-720+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-42;368-427
|
2.000
|
43-367;428-731
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
81683.210
|
9.129
|
21.500
|
20.520
|
11.765
|
44.596
|
55.404
|
12.175
|
8.345
|
48.700
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
777.204
|
647.992
|
1270.139
|
822.003
|
1072.277
|
1077.326
|
2106.752
|
627.629
|
349.134
|
279.374
|
309.271
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
0.206
|
-0.520
|
0.352
|
— |
0.976
|
-0.880
|
1.886
|
— | — |
3.804
|
— | — |
No JSON data available for plots.