Hg_chrom8_TN10mRNA_15631
Organism: Heterodera glycines Gene Locus: chr8:5335704-5337885 Feature type: polypeptideProtein Sequence
Length: 303
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.576 | 1.075 | 0.48 | 0.569 | 1.87 | 1.1 | 0.786 | 1.485 | 1.32 | 0.847 | 1.45 | 1.553 | 1.1 | 0.508 | 1.886 | 0.99 | 1.028 | 0.55 | 1.015 | 0.777 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14769
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKICETETFKRTVKSLKRK,RKRTKKAKRKSEKQRKERD,VKSLKRKEEKEQGKGGGTEKERKRERKRTKKAKRKSEKQRKER
|
42-65
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.227
|
0.256
|
0.034
|
0.641
|
0.218
|
0.222
|
0.434
|
0.028
|
0.253
|
0.296
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011977
|
1.000
|
1.000
|
Hsc_gene_6634.t1
|
Hsc_gene_6634.t1
|
— | — |
KAF7634370.1 DUF862 domain-containing protein [Meloidogyne graminicola]
|
KAK3195931
|
0.450
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008233
|
— |
IPR008580+41-173_41-182_42-258_54-165+|IPR042266+35-205+
|
SM01179+41-182+
|
PF05903+54-165+PPPDE_putative_peptidase_domain
|
— |
PTHR12378+42-258+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32;196-303
|
1.000
|
33-195
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
35309.140
|
10.113
|
19.500
|
35.644
|
10.891
|
57.756
|
42.244
|
21.782
|
13.861
|
39.934
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
818.763
|
70.120
|
642.140
|
1380.238
|
2332.149
|
1645.489
|
691.685
|
833.273
|
66.560
|
684.007
|
419.387
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.966
|
4.163
|
1.213
|
0.724
|
-0.487
|
-1.243
|
-1.082
|
— |
-3.474
|
4.553
|
— | — | — |
No JSON data available for plots.