Hg_chrom8_TN10mRNA_15632
Organism: Heterodera glycines Gene Locus: chr8:5338560-5347516 Feature type: polypeptideProtein Sequence
Length: 2,618
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 0.675 | 0.66 | 0.356 | 3.419 | 0.872 | 0.859 | 0.554 | 0.475 | 0.521 | 2.408 | 0.382 | 0.361 | 1.117 | 1.278 | 0.944 | 0.971 | 0.504 | 0.264 | 0.146 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14770
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
KKRK,KKGETGREEKKKKEH,RKQSETEKEKKKGTK,KKRPKTEKKEKKERA,KKVKEEKREPKEVKR,KKDHFEMDELKKWKN,KRDEKKTEEEKKDKE,RRGEKKEDEESKEKRA,KKEDDREKESVKGRER,KKAEEGKMKKHREEKK,KKRDNDNAEEQRKEKD,KREEPRKKVTKRKEAK,RKNEARRELQRTKEERK,KRENERQRESEMKLKEK,KKAEKETKKGVVKKCKE,KKGVVKKCKEEEKKEKE,RKKDKGKDNKDKRDEKK,KREQKRALSKEEKKSDR,RRKSGENRKKGEERDRKN,RKNTKNTETEKEEKEKRN,KKSDDERVQKAGKKRGRT,RKKDKEEEKTLKEKEERK,KKKGTKAREEEKRKRNKE,KKDKEEAIKKEEGKRDVK,RRDRKEAIKKEEKREQKR,KKEEKREQKRALSKEEKK,KKEEEKRDSEETQKKGKE,KKEEEKRDSEETQKKMDR,KKEESEREENKIEEKKKGT,KREENKEESEKKKRVEKKK,KKKANEERRKSGENRKKGE,RKSGENRKKGEERDRKNTK,KKGLIVDKREEEGEKGRER,KREEEGEKGRERKKKKKKK,KKGKEKEDEKEKGKETRKK,RRELQRTKEERKGEKERKS,RKSDRLEERTDGETDEKKR,KREGEKDVEAKDREKKKEQ,KKKEQEEKRDISVKEKKRG,KKEQEEKRDISVKEKKRGP,KKDEQNEAKKSAEREEKKR,RKKQRDEKKEEKGNREEKK,RKRHHDEKKAEEGKMKKHR,KRHHDEKKAEEGKMKKHRE,KKETLKKEEKKEEEKRKEE,KRKEEQKEERGENEEERKK,RKEEQKEERGENEEERKKD,KRDSEETQKKGKEEERRDR,KRDSEETQKKGKEEEKRDK,RKIKEAEKTKTEGEEKEKR,KREKEEKKRTEETKRTERR,EKKTPKREKEEKKRTEETKRT
|
— | — |
60-110
|
0.998
|
1-29
|
0.954
|
1.000
|
0.000
|
0.000
|
0.217
|
0.137
|
0.019
|
0.464
|
0.077
|
0.065
|
0.046
|
0.031
|
0.198
|
0.783
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011978
|
1.000
|
1.000
|
Hsc_gene_6632.t1
|
— | — | — |
KAI1701587.1 Serine Rich Adhesion Protein-like [Ditylenchus destructor]
|
No
|
-0.420
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR039188+732-1051+
|
— | — | — |
PTHR23075+732-1051+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
142-2107;2223-2512;2618-2618
|
3.000
|
1-141;2108-2222;2513-2617
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
293906.090
|
5.453
|
-37.500
|
47.403
|
3.247
|
66.234
|
33.766
|
23.262
|
24.141
|
44.041
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
12270.268
|
2698.248
|
303.756
|
245.151
|
15060.248
|
93911.338
|
450.908
|
6611.681
|
191.631
|
8808.202
|
5115.386
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.384
|
-3.598
|
— |
5.910
|
2.656
|
-7.693
|
-3.944
|
-3.727
|
-5.662
|
— | — | — | — |