Hg_chrom8_TN10mRNA_15638
Organism: Heterodera glycines Gene Locus: chr8:5376374-5379512 Feature type: polypeptideProtein Sequence
Length: 509
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.982 | 0.731 | 0.572 | 0.677 | 0.753 | 0.856 | 0.608 | 0.688 | 1.31 | 1.938 | 0.476 | 2.311 | 2.238 | 0.756 | 0.762 | 1.319 | 0.837 | 1.042 | 2.418 | 0.462 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14775
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.075
|
0.181
|
0.010
|
0.120
|
0.256
|
0.403
|
0.359
|
0.201
|
0.675
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002500
|
3.000
|
1.000
|
Hsc_gene_6624.t1
|
Hsc_gene_6624.t1
|
— |
Q6NYN7.1 Solute carrier family 22 member 6 [Danio rerio]
|
KAF7634361.1 MFS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.958|GO:0009987_0.916|GO:0005575_0.824|GO:0110165_0.823|GO:0016020_0.797|GO:0006810_0.790|GO:0051179_0.790|GO:0051234_0.790|GO:0071944_0.769|GO:0003674_0.765|GO:0005886_0.765|GO:0055085_0.743|GO:0005215_0.679|GO:0022857_0.678|GO:0071705_0.516
|
IPR005828+100-472+|IPR020846+12-467+|IPR036259+21-472_70-476+
|
— |
PF00083+100-472+Sugar_(and_other)_transporter
|
— |
PTHR24064+11-472+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
506-509
|
1.000
|
1-505
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
57114.150
|
6.381
|
-0.500
|
15.914
|
14.145
|
36.739
|
63.261
|
8.251
|
7.662
|
46.955
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
977.460
|
178.534
|
727.851
|
728.246
|
1034.486
|
1162.585
|
1209.972
|
2423.629
|
575.409
|
1045.342
|
843.942
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.800
|
1.891
|
— |
0.474
|
— | — |
0.958
|
-0.861
|
— | — | — | — | — |
No JSON data available for plots.