Hg_chrom8_TN10mRNA_15639
Organism: Heterodera glycines Gene Locus: chr8:5377005-5379512 Feature type: polypeptideProtein Sequence
Length: 471
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.988 | 0.593 | 0.463 | 1.025 | 0.495 | 0.817 | 0.506 | 0.637 | 1.463 | 1.894 | 0.354 | 2.373 | 2.772 | 1.102 | 0.823 | 1.244 | 0.905 | 1.029 | 1.96 | 0.437 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14775
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.091
|
0.149
|
0.012
|
0.120
|
0.207
|
0.274
|
0.312
|
0.263
|
0.643
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002500
|
3.000
|
1.000
|
Hsc_gene_6624.t1
|
Hsc_gene_6624.t1;Hsc_gene_6624.t2
|
— |
Q6NYN7.1 Solute carrier family 22 member 6 [Danio rerio]
|
KAF7634361.1 MFS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.955|GO:0009987_0.904|GO:0005575_0.802|GO:0110165_0.802|GO:0006810_0.787|GO:0051179_0.787|GO:0051234_0.787|GO:0003674_0.764|GO:0016020_0.760|GO:0005886_0.753|GO:0071944_0.753|GO:0055085_0.731|GO:0005215_0.678|GO:0022857_0.678
|
IPR005828+100-434+|IPR020846+12-471+|IPR036259+19-438_70-468+
|
— |
PF00083+100-434+Sugar_(and_other)_transporter
|
— |
PTHR24064+11-452+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-471
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
52882.900
|
7.998
|
7.000
|
13.163
|
15.287
|
33.121
|
66.879
|
7.643
|
5.520
|
47.558
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
977.460
|
178.534
|
727.851
|
728.246
|
1034.486
|
1162.585
|
1209.972
|
2423.629
|
575.409
|
1045.342
|
843.942
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.800
|
1.891
|
— |
0.474
|
— | — |
0.958
|
-0.861
|
— | — | — | — | — |
No JSON data available for plots.