Hg_chrom8_TN10mRNA_15644
Organism: Heterodera glycines Gene Locus: chr8:5392868-5394787 Feature type: polypeptideProtein Sequence
Length: 321
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.616 | 1.014 | 0.283 | 1.074 | 1.194 | 0.559 | 2.225 | 0.623 | 0.623 | 0.758 | 0.802 | 0.916 | 0.606 | 3.475 | 1.144 | 0.712 | 0.817 | 0.472 | 0.0 | 0.641 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14780
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.676
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRRR,RNGRPGRNGRPGAPGK
|
5-66
|
0.813
|
— | — | — | — |
0.000
|
— | — |
0.049
|
0.050
|
0.011
|
0.142
|
0.466
|
0.198
|
0.266
|
0.007
|
0.676
|
0.190
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004757
|
2.000
|
1.000
|
Hsc_gene_6621.t1
|
Hsc_gene_15432.t1;Hsc_gene_18967.t1;Hsc_gene_18980.t1;Hsc_gene_19933.t1;Hsc_gene_24338.t1;Hsc_gene_24339.t1;Hsc_gene_25812.t1;Hsc_gene_6621.t1
|
D2024.8;F02D10.1;F23H12.4b;F52B11.4;W01B6.7;W05B2.5;W05B2.6;Y38C1BA.3;Y73B6BL.34;ZK1010.7
|
P08124.2 Cuticle collagen 1 [Caenorhabditis elegans]
|
KAI1711264.1 collagen triple helix repeat (20 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.936|GO:0032501_0.858|GO:0032502_0.838|GO:0048856_0.838|GO:0007275_0.811|GO:0005575_0.776|GO:0110165_0.776|GO:0040002_0.670|GO:0042335_0.670|GO:0071944_0.614|GO:0030312_0.554
|
IPR008160+171-227_239-296+|IPR050632+40-303+
|
— |
PF01391+171-227_239-296+Collagen_triple_helix_repeat_(20_copies)
|
— |
PTHR24637+40-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;86-321
|
1.000
|
2-85
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.874
|
32777.990
|
8.632
|
9.000
|
20.872
|
5.607
|
37.383
|
62.617
|
12.150
|
8.723
|
64.174
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
brown
|
317.629
|
120.302
|
609.600
|
178.876
|
391.301
|
1366.513
|
380.912
|
363.108
|
73.181
|
55.760
|
63.226
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.113
|
0.435
|
-1.660
|
1.097
|
1.819
|
-1.833
|
-2.021
|
— | — | — |
3.756
|
— | — |
No JSON data available for plots.