Hg_chrom8_TN10mRNA_15645
Organism: Heterodera glycines Gene Locus: chr8:5392890-5394476 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.63 | 1.185 | 0.116 | 0.879 | 1.221 | 0.572 | 2.161 | 0.637 | 0.778 | 0.904 | 0.917 | 0.749 | 0.442 | 3.491 | 0.91 | 0.728 | 0.835 | 0.434 | 0.245 | 0.656 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14780
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.676
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RNGRPGRNGRPGAPGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.046
|
0.045
|
0.009
|
0.148
|
0.436
|
0.199
|
0.248
|
0.006
|
0.673
|
0.190
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004757
|
2.000
|
1.000
|
Hsc_gene_6621.t1
|
Hsc_gene_6621.t1
|
— |
P17656.1 Cuticle collagen 2 [Caenorhabditis elegans]
|
KAF7637760.1 Col_cuticle_N domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.937|GO:0032501_0.846|GO:0032502_0.833|GO:0048856_0.833|GO:0007275_0.798|GO:0005575_0.784|GO:0110165_0.784|GO:0040002_0.670|GO:0042335_0.670|GO:0071944_0.611|GO:0030312_0.537
|
IPR008160+162-218_230-287+|IPR050632+31-290+
|
— |
PF01391+162-218_230-287+Collagen_triple_helix_repeat_(20_copies)
|
— |
PTHR24637+31-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
80-314
|
1.000
|
1-79
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.851
|
32045.310
|
9.028
|
10.000
|
19.745
|
5.414
|
37.261
|
62.739
|
11.783
|
7.962
|
63.057
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
brown
|
317.629
|
120.302
|
609.600
|
178.876
|
391.301
|
1366.513
|
380.912
|
363.108
|
73.181
|
55.760
|
63.226
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.113
|
0.435
|
-1.660
|
1.097
|
1.819
|
-1.833
|
-2.021
|
— | — | — |
3.756
|
— | — |
No JSON data available for plots.