SCN Proteipedia

Hg_chrom8_TN10mRNA_15646

Organism: Heterodera glycines Gene Locus: chr8:5395799-5397039 Feature type: polypeptide

Protein Sequence

Length: 252

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.508	0.831	0.433	1.368	0.265	0.407	0.472	1.587	1.587	1.877	0.541	1.634	3.307	1.145	0.81	0.964	0.716	1.142	1.526	1.634	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14781	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	lysosome_vacuole	—	—	22-63	0.789	1-29	0.999	—	—	0.000	—	—	0.057	0.104	0.013	0.119	0.524	0.568	0.474	0.008	0.529	0.069

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011985	1.000	1.000	Hsc_gene_6620.t1	Hsc_gene_6620.t1	—	—	KAI1726983.1 frag1/DRAM/Sfk1 family domain-containing protein [Ditylenchus destructor]	No	-0.250

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000139	GO:0008150_0.953\|GO:0005575_0.897\|GO:0110165_0.897\|GO:0009987_0.893\|GO:0016020_0.867\|GO:0008152_0.769\|GO:0044238_0.744\|GO:0044237_0.739\|GO:1901135_0.736\|GO:0009058_0.735\|GO:0006629_0.723\|GO:0008610_0.715\|GO:0044249_0.715\|GO:1901137_0.714\|GO:0019538_0.713\|GO:0043170_0.713\|GO:0044255_0.707\|GO:0006793_0.701\|GO:0006796_0.699\|GO:0019637_0.697\|GO:0046486_0.692\|GO:0090407_0.692\|GO:0006644_0.691\|GO:0006650_0.691\|GO:0009059_0.691\|GO:0008654_0.687\|GO:0045017_0.686\|GO:0046474_0.686\|GO:0006643_0.683\|GO:0046467_0.683\|GO:1903509_0.682\|GO:0010467_0.681\|GO:0051604_0.680\|GO:0006661_0.678\|GO:0006664_0.678\|GO:0009247_0.678\|GO:0046488_0.678\|GO:0006505_0.670\|GO:0006506_0.670\|GO:0180046_0.670\|GO:0071944_0.581\|GO:0005886_0.577\|GO:0005622_0.515\|GO:0005737_0.515\|GO:0005773_0.502\|GO:0043226_0.502\|GO:0043227_0.502\|GO:0043229_0.502\|GO:0043231_0.502	IPR019402+28-242+\|IPR039545+21-243+	—	PF10277+28-242+Frag1/DRAM/Sfk1_family	—	PTHR12892+21-243+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-252	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.776	29440.190	8.896	13.000	14.683	22.619	30.952	69.048	10.714	3.968	42.857

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	247.967	49.762	79.152	70.494	306.583	560.471	267.659	168.546	24.277	503.147	297.917

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.441	0.365	—	2.088	0.886	-1.059	-1.843	0.809	—	—	—	—	—

No JSON data available for plots.

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