Hg_chrom8_TN10mRNA_15652
Organism: Heterodera glycines Gene Locus: chr8:5417384-5419595 Feature type: polypeptideProtein Sequence
Length: 456
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.663 | 0.918 | 1.037 | 0.454 | 2.412 | 1.406 | 0.235 | 0.877 | 1.267 | 1.452 | 1.263 | 0.903 | 1.036 | 0.295 | 1.566 | 0.752 | 1.043 | 0.864 | 1.181 | 0.451 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14787
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.888
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.108
|
0.078
|
0.009
|
0.258
|
0.686
|
0.597
|
0.733
|
0.040
|
0.273
|
0.005
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011990
|
1.000
|
1.000
|
Hsc_gene_6614.t1
|
Hsc_gene_6614.t1
|
— |
Q5REB4.1 Syntaxin-18 [Pongo abelii]
|
KAH7730516.1 syntaxin-18-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.690|GO:0110165_0.684|GO:0016020_0.653|GO:0005886_0.642|GO:0071944_0.642|GO:0008150_0.623|GO:0005622_0.611|GO:0009987_0.591|GO:0043226_0.584|GO:0043229_0.554|GO:0005737_0.539|GO:0065007_0.536|GO:0051179_0.535|GO:0006810_0.525|GO:0051234_0.525|GO:0050789_0.518|GO:0043227_0.516
|
— | — | — | — |
PTHR15959+1-283+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
218-313
|
2.000
|
1-217;314-456
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
53835.950
|
4.910
|
-15.000
|
37.939
|
8.553
|
58.991
|
41.009
|
17.763
|
20.175
|
37.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1466.579
|
1909.667
|
1168.940
|
785.109
|
1017.538
|
1222.593
|
1140.463
|
1351.747
|
2766.343
|
1118.004
|
1824.435
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.939
|
-1.420
|
-0.465
|
0.343
|
0.279
|
— | — | — | — |
-1.674
|
— | — | — |
No JSON data available for plots.