SCN Proteipedia

Hg_chrom8_TN10mRNA_15654

Organism: Heterodera glycines Gene Locus: chr8:5423199-5428312 Feature type: polypeptide

Protein Sequence

Length: 767

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.773	0.637	0.972	0.45	1.478	0.869	0.761	1.108	0.811	1.163	1.007	1.304	1.34	1.128	1.623	1.397	0.791	0.691	0.802	0.92	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14789	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.399	0.214	0.045	0.684	0.191	0.302	0.152	0.037	0.393	0.048

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004266	2.000	1.000	Hsc_gene_6612.t1	Hsc_gene_6612.t1;Hsc_gene_6612.t2	—	Q9Z2A0.2 3-phosphoinositide-dependent protein kinase 1 [Mus musculus]	KAF7630774.1 Protein kinase domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.980\|GO:0009987_0.953\|GO:0005575_0.905\|GO:0110165_0.905\|GO:0065007_0.890\|GO:0050789_0.888\|GO:0003674_0.877\|GO:0050794_0.873\|GO:0003824_0.844\|GO:0140096_0.844\|GO:0004672_0.835\|GO:0016301_0.835\|GO:0016740_0.835\|GO:0016772_0.835\|GO:0016773_0.835\|GO:0005622_0.823\|GO:0050896_0.755\|GO:0051716_0.699\|GO:0004674_0.673\|GO:0016020_0.666\|GO:0071840_0.646\|GO:0007154_0.645\|GO:0023052_0.635\|GO:0016043_0.633\|GO:0007165_0.626\|GO:0048518_0.608\|GO:0005737_0.579\|GO:0032502_0.565\|GO:0048856_0.563\|GO:0005488_0.560\|GO:0032501_0.550\|GO:0071944_0.542\|GO:0048522_0.522\|GO:0043226_0.513\|GO:0048519_0.502	IPR000719+174-474_177-335_368-474+\|IPR008271+298-310+\|IPR011009+171-505+\|IPR011993+563-699+\|IPR017441+180-203+\|IPR033931+586-691_591-691+\|IPR039046+172-474+\|IPR050236+73-500+	SM00220+174-474+	PF00069+177-335_368-474+Protein_kinase_domain\|PF14593+591-691+PH_domain	G3DSA:1.10.510.10:FF:000024+262-497+Probable_serine/threonine-protein_kinase_cot-1\|G3DSA:2.30.29.30:FF:000324+564-697+Phosphoinositide-dependent_kinase_1,_isoform_F\|G3DSA:3.30.200.20:FF:000042+167-262+Aurora_kinase_A	PTHR24356+73-500+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-169;704-767	1.000	170-703	3nuy_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.793	86922.110	8.015	11.500	31.030	11.213	51.760	48.240	16.819	14.211	47.458

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	1886.219	9557.885	2041.395	577.330	1237.562	1316.843	674.307	1576.216	755.945	1317.172	1076.646

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.459	-4.186	-1.712	1.069	—	-0.955	—	-1.085	—	—	—	—	—

No JSON data available for plots.

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