Hg_chrom8_TN10mRNA_15655
Organism: Heterodera glycines Gene Locus: chr8:5432587-5436927 Feature type: polypeptideProtein Sequence
Length: 795
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.053 | 0.819 | 0.686 | 0.998 | 1.321 | 1.193 | 0.689 | 0.943 | 1.23 | 0.969 | 0.686 | 1.11 | 1.328 | 1.113 | 1.438 | 1.563 | 0.969 | 0.648 | 0.774 | 0.481 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14790
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.787
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.223
|
0.496
|
0.094
|
0.488
|
0.306
|
0.227
|
0.230
|
0.191
|
0.282
|
0.148
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004265
|
2.000
|
1.000
|
Hsc_gene_6610.t1
|
Hsc_gene_6610.t1
|
— |
Q11186.2 Patanin-like phospholipase domain-containing protein atgl-1 [Caenorhabditis elegans]
|
KAF7634809.1 PNPLA domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0016042|GO:0016787
|
GO:0005575_0.884|GO:0110165_0.874|GO:0005622_0.796|GO:0008150_0.749|GO:0003674_0.722|GO:0009987_0.709|GO:0043226_0.641|GO:0043229_0.611|GO:0003824_0.546|GO:0008152_0.544|GO:0044238_0.544|GO:0044237_0.536|GO:0016020_0.507
|
IPR002641+32-194_32-199+|IPR016035+32-275+|IPR033562+21-296+
|
— |
PF01734+32-194+Patatin-like_phospholipase
|
G3DSA:3.40.1090.10:FF:000003+104-273+Patatin-like_phospholipase_domain-containing_protein_2
|
PTHR12406+21-296+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
511-795
|
1.000
|
1-510
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
87839.140
|
7.213
|
6.500
|
25.157
|
9.308
|
50.189
|
49.811
|
13.459
|
11.698
|
51.950
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
tan
|
2100.502
|
1610.200
|
2605.448
|
1001.160
|
2937.912
|
1676.384
|
2195.831
|
4745.074
|
2179.607
|
1265.487
|
1657.253
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.466
|
-0.823
|
-1.272
|
1.522
|
-0.795
|
0.399
|
1.396
|
-0.969
|
— | — | — | — | — |
No JSON data available for plots.