Hg_chrom8_TN10mRNA_15656
Organism: Heterodera glycines Gene Locus: chr8:5439249-5440755 Feature type: polypeptideProtein Sequence
Length: 316
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.361 | 0.589 | 0.575 | 1.091 | 0.475 | 0.73 | 0.829 | 0.949 | 1.125 | 1.625 | 0.336 | 0.931 | 1.758 | 0.609 | 1.873 | 1.266 | 0.83 | 1.103 | 0.974 | 0.838 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14791
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRKR
|
— | — |
29-73
|
0.988
|
— | — |
0.000
|
— | — |
0.102
|
0.859
|
0.087
|
0.187
|
0.165
|
0.066
|
0.129
|
0.054
|
0.185
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011992
|
1.000
|
1.000
|
Hsc_gene_6609.t1
|
Hsc_gene_6609.t1
|
— |
O97470.1 Mitochondrial substrate carrier family protein ancA [Dictyostelium discoideum]
|
KAH7704575.1 Protein R07E3.4 [Aphelenchus avenae]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005471|GO:0005743|GO:0055085|GO:0140021|GO:1990544
|
GO:0005575_0.836|GO:0110165_0.830|GO:0008150_0.802|GO:0016020_0.750|GO:0009987_0.716|GO:0005622_0.683|GO:0003674_0.676|GO:0005737_0.669|GO:0043226_0.645|GO:0043229_0.631|GO:0043227_0.622|GO:0043231_0.614|GO:0006810_0.611|GO:0051179_0.611|GO:0051234_0.611
|
IPR002067+25-38_38-52_97-117_150-168_192-210_237-259+|IPR002113+22-34_23-314_108-120_135-148_233-249+|IPR018108+20-122_21-123_134-219_138-221_228-314_228-316+|IPR023395+18-316_22-312+
|
— |
PF00153+21-123_138-221_228-314+Mitochondrial_carrier_protein
|
— |
PTHR45635+23-314+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-316
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
34793.520
|
10.156
|
20.000
|
19.304
|
12.342
|
38.608
|
61.392
|
13.291
|
6.013
|
51.899
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightgreen
|
449.555
|
714.556
|
359.430
|
430.633
|
473.796
|
559.326
|
399.865
|
337.407
|
47.116
|
703.338
|
422.100
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.222
|
-0.868
|
0.370
|
— |
0.254
|
-0.474
|
-0.833
|
0.387
|
-4.039
|
— | — | — | — |
No JSON data available for plots.