Hg_chrom8_TN10mRNA_15658
Organism: Heterodera glycines Gene Locus: chr8:5443152-5447056 Feature type: polypeptideProtein Sequence
Length: 595
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 0.782 | 0.825 | 0.58 | 1.261 | 0.948 | 0.66 | 0.672 | 1.494 | 1.635 | 0.815 | 1.582 | 1.681 | 0.84 | 1.2 | 0.888 | 0.606 | 1.095 | 1.81 | 0.84 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14793
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — |
1-28
|
0.903
|
0.965
|
7.000
|
7.000
|
0.077
|
0.081
|
0.004
|
0.107
|
0.456
|
0.620
|
0.663
|
0.010
|
0.787
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004250
|
2.000
|
1.000
|
Hsc_gene_6608.t1
|
Hsc_gene_6608.t1;Hsc_gene_6608.t2
|
— |
Q28EW0.1 Transmembrane protein 87A [Xenopus tropicalis]
|
KAI1731261.1 lung seven transmembrane receptor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.815|GO:0005575_0.742|GO:0110165_0.738|GO:0005622_0.603|GO:0005737_0.580|GO:0009987_0.529
|
IPR009637+46-537+|IPR053937+245-490+
|
— |
PF06814+245-490+GOST,_seven_transmembrane_domain
|
— |
PTHR21229+46-537+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
568-595
|
1.000
|
1-567
|
8hsi_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
68145.280
|
6.331
|
-1.000
|
24.706
|
12.605
|
41.681
|
58.319
|
12.605
|
12.101
|
43.361
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
1440.618
|
2775.425
|
2129.561
|
1583.351
|
1875.635
|
2926.238
|
2194.915
|
1276.960
|
838.884
|
137.759
|
438.241
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.611
|
-0.947
|
-0.320
|
0.212
|
0.656
|
-0.406
|
-1.299
|
0.922
|
2.571
|
— |
4.197
|
— | — |