Hg_chrom8_TN10mRNA_15660
Organism: Heterodera glycines Gene Locus: chr8:5449844-5451808 Feature type: polypeptideProtein Sequence
Length: 332
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.121 | 0.841 | 0.876 | 0.831 | 0.954 | 0.772 | 2.761 | 1.355 | 0.669 | 0.692 | 0.593 | 1.063 | 0.418 | 2.027 | 1.291 | 0.775 | 0.296 | 0.456 | 0.695 | 0.443 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14795
|
— | — |
1.222
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.877
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKRR,RRGP
|
— | — | — | — | — | — |
0.001
|
— | — |
0.067
|
0.079
|
0.006
|
0.100
|
0.447
|
0.228
|
0.416
|
0.002
|
0.504
|
0.407
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004248
|
2.000
|
1.000
|
Hsc_gene_6606.t1
|
Hsc_gene_6606.t1
|
— |
P20784.1 Cuticle collagen rol-6 [Caenorhabditis elegans]
|
KAI1728807.1 cuticle collagen lon-3 [Ditylenchus destructor]
|
No
|
-0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.915|GO:0032502_0.783|GO:0048856_0.783|GO:0032501_0.781|GO:0005575_0.736|GO:0110165_0.728|GO:0003674_0.672|GO:0030312_0.663|GO:0071944_0.663|GO:0007275_0.530
|
IPR002486+5-57_9-57+|IPR050632+12-296+
|
SM01088+5-57+
|
PF01484+9-57+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+12-296+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
52-332
|
1.000
|
1-51
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.973
|
33153.590
|
7.153
|
3.500
|
23.494
|
6.627
|
37.349
|
62.651
|
12.952
|
10.542
|
64.458
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
164.491
|
242.642
|
228.808
|
74.716
|
40.487
|
456.979
|
29.381
|
376.196
|
40.839
|
145.565
|
100.682
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.315
|
-1.836
|
-1.505
|
-0.918
|
3.512
|
-3.950
|
— |
-3.534
|
— | — | — | — | — |
No JSON data available for plots.