Hg_chrom8_TN10mRNA_15663
Organism: Heterodera glycines Gene Locus: chr8:5455373-5456603 Feature type: polypeptideProtein Sequence
Length: 113
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.515 | 0.412 | 0.965 | 0.0 | 1.475 | 0.908 | 0.527 | 2.212 | 1.377 | 1.435 | 1.475 | 2.082 | 0.737 | 1.021 | 1.445 | 0.632 | 0.435 | 1.207 | 2.723 | 1.041 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14798
|
— | — |
1.667
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — |
25-52
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.114
|
0.883
|
0.026
|
0.111
|
0.186
|
0.019
|
0.018
|
0.142
|
0.111
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011993
|
1.000
|
1.000
|
Hsc_gene_6603.t1
|
Hsc_gene_6603.t1
|
— | — |
KAI6190534.1 ATP synthase subunit e, mitochondrial [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000276|GO:0015078|GO:0015986
|
— |
IPR008386+21-89_23-79+
|
— |
PF05680+23-79+ATP_synthase_E_chain
|
— |
PTHR12427+21-89+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-113
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
13453.690
|
9.713
|
5.500
|
35.398
|
14.159
|
47.788
|
52.212
|
21.239
|
14.159
|
36.283
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
darkmagenta
|
471.331
|
62.430
|
78.435
|
73.808
|
81.424
|
86.484
|
318.630
|
361.473
|
774.854
|
1082.427
|
950.610
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.895
|
1.956
|
— | — |
-3.256
|
-3.533
|
— | — |
No JSON data available for plots.