SCN Proteipedia

Hg_chrom8_TN10mRNA_15666

Organism: Heterodera glycines Gene Locus: chr8:5462051-5468854 Feature type: polypeptide

Protein Sequence

Length: 1,173

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.872	0.892	0.729	0.588	0.966	1.049	0.68	1.279	1.478	1.417	0.698	1.404	1.397	0.82	1.409	1.108	0.797	1.175	1.18	0.752	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14801	—	—	1.222	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Male	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	lysosome_vacuole	—	KKNVFIKIGHNRRIGRR	—	—	53-74	0.999	—	—	0.002	—	—	0.104	0.097	0.024	0.177	0.507	0.625	0.535	0.010	0.539	0.018

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011996	1.000	1.000	Hsc_gene_6599.t1	Hsc_gene_6599.t1;Hsc_gene_6600.t1;Hsc_gene_6600.t2	—	P54708.1 Potassium-transporting ATPase alpha chain 2 [Rattus norvegicus]	KAF7630783.1 Cation_ATPase_N domain-containing protein [Meloidogyne graminicola]	No	-0.040

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887	GO:0008150_0.886\|GO:0005575_0.864\|GO:0110165_0.864\|GO:0016020_0.793\|GO:0009987_0.765\|GO:0005886_0.733\|GO:0071944_0.733\|GO:0051179_0.705\|GO:0006810_0.697\|GO:0051234_0.697\|GO:0003674_0.680\|GO:0065007_0.588\|GO:0055085_0.575\|GO:0006811_0.567\|GO:0034220_0.538\|GO:0005622_0.517\|GO:0043226_0.517	IPR001757+836-935_838-854_866-882_898-923+\|IPR004014+94-176_120-169+\|IPR006068+950-1158+\|IPR008250+225-332+\|IPR023214+771-911+\|IPR023298+119-1164+\|IPR023299+455-760_573-629+\|IPR036412+675-958+\|IPR050510+771-1164+	SM00831+94-176+	PF00122+225-418+E1-E2_ATPase\|PF00689+950-1158+Cation_transporting_ATPase,_C-terminus\|PF00690+120-169+Cation_transporter/ATPase,_N-terminus\|PF13246+576-699+Cation_transport_ATPase_(P-type)	G3DSA:1.20.1110.10:FF:000064+907-1164+Cation_transporting_ATPase	PTHR43294+771-1164+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	533-578	2.000	1-532;579-1173	5ksd_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.775	132231.970	9.055	35.000	23.870	11.679	44.416	55.584	14.066	9.804	47.400

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	lightyellow	5990.567	2898.622	4937.942	3569.484	3922.695	4335.188	3459.078	10200.183	1037.677	12934.278	7835.734

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.540	0.163	-0.360	—	—	-0.316	1.133	-1.419	-3.751	1.940	—	—	—

No JSON data available for plots.

Back to Browser