SCN Proteipedia

Hg_chrom8_TN10mRNA_15667

Organism: Heterodera glycines Gene Locus: chr8:5469162-5471377 Feature type: polypeptide

Protein Sequence

Length: 363

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.961	1.089	0.701	0.19	0.964	3.249	0.459	1.102	0.796	1.08	0.334	2.755	1.224	2.437	1.181	0.826	0.723	0.835	0.0	0.324	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14802	—	—	1.333	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	3.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.666	0.088	0.006	0.524	0.203	0.157	0.207	0.032	0.081	0.040

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004255	2.000	1.000	Hsc_gene_6598.t1	Hsc_gene_6598.t1	—	Q8C7E9.2 Cleavage stimulation factor subunit 2 tau variant [Mus musculus]	KAF7634821.1 RRM domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0031124	GO:0008150_0.869\|GO:0005575_0.793\|GO:0110165_0.785\|GO:0003674_0.742\|GO:0005488_0.742\|GO:0005622_0.726\|GO:0016020_0.704\|GO:0009987_0.667\|GO:0008152_0.660\|GO:0043170_0.659\|GO:0044238_0.642\|GO:0043226_0.634\|GO:0043229_0.625\|GO:0006139_0.624\|GO:0016070_0.615\|GO:0090304_0.615\|GO:0097159_0.597\|GO:0043227_0.588\|GO:0003676_0.586\|GO:0043231_0.581\|GO:0009058_0.545\|GO:0009059_0.545\|GO:0010467_0.545\|GO:0044237_0.545\|GO:0044249_0.545\|GO:0065007_0.531\|GO:0050789_0.520\|GO:0003723_0.515	IPR000504+12-90_13-86_14-84+\|IPR012677+1-110+\|IPR025742+117-194+\|IPR026896+320-358+\|IPR035979+4-99+\|IPR038192+317-362+	SM00360+13-86+	PF00076+14-84+RNA_recognition_motif\|PF14304+320-358+Transcription_termination_and_cleavage_factor_C-terminal\|PF14327+117-194+Hinge_domain_of_cleavage_stimulation_factor_subunit_2	G3DSA:1.25.40.630:FF:000001+116-193+Cleavage_stimulation_factor_subunit_2	PTHR45735+1-358+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-7;76-363	1.000	8-75	6q2i_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.746	40601.130	6.094	-2.000	19.835	7.713	47.383	52.617	10.193	9.642	49.587

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	darkgrey	764.968	403.302	385.368	447.081	515.857	417.038	751.756	330.926	183.758	1989.670	1215.708

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.296	—	0.324	0.174	-0.292	0.860	-0.438	1.326	-2.226	—	—	—	—

No JSON data available for plots.

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