Hg_chrom8_TN10mRNA_15668
Organism: Heterodera glycines Gene Locus: chr8:5471760-5472586 Feature type: polypeptideProtein Sequence
Length: 172
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.42 | 0.811 | 0.634 | 0.601 | 0.484 | 0.745 | 0.761 | 1.744 | 1.938 | 1.493 | 0.529 | 2.052 | 2.099 | 0.559 | 0.949 | 1.329 | 0.667 | 0.529 | 1.342 | 0.855 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14803
|
— | — |
1.889
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
3.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — |
50-73
|
0.939
|
— | — |
0.000
|
— | — |
0.150
|
0.776
|
0.478
|
0.141
|
0.205
|
0.183
|
0.072
|
0.086
|
0.158
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004254
|
2.000
|
1.000
|
Hsc_gene_6597.t1
|
Hsc_gene_6597.t1
|
— |
Q8N2U0.1 Transmembrane protein 256 [Homo sapiens]
|
KAI1731484.1 transmembrane protein like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.889|GO:0110165_0.885|GO:0016020_0.839|GO:0043226_0.752|GO:0043227_0.739|GO:0005622_0.504|GO:0005737_0.502
|
IPR006696+47-170_79-160+
|
— |
PF04241+79-160+Protein_of_unknown_function_(DUF423)
|
— |
PTHR43461+47-170+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-172
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
19054.190
|
8.707
|
6.000
|
18.023
|
15.698
|
37.791
|
62.209
|
11.628
|
6.395
|
47.093
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
234.863
|
492.764
|
347.312
|
416.121
|
429.225
|
335.457
|
258.927
|
297.613
|
34.307
|
35.265
|
34.854
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.734
|
-0.381
|
0.369
|
— |
-0.340
|
-0.365
|
— | — | — | — | — | — | — |
No JSON data available for plots.