Hg_chrom8_TN10mRNA_15674
Organism: Heterodera glycines Gene Locus: chr8:5483227-5485383 Feature type: polypeptideProtein Sequence
Length: 445
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.732 | 1.568 | 0.858 | 0.852 | 1.086 | 1.037 | 0.669 | 0.899 | 0.699 | 1.579 | 0.647 | 1.19 | 1.685 | 0.864 | 1.101 | 1.284 | 0.921 | 0.987 | 0.691 | 0.793 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14809
|
— | — |
1.778
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
3.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
20-Not_Clustered
|
0.743
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
KKLLKWPKRG
|
42-62
|
0.987
|
37-70
|
0.967
|
1-20
|
0.974
|
1.000
|
0.000
|
0.000
|
0.411
|
0.295
|
0.047
|
0.267
|
0.249
|
0.222
|
0.296
|
0.044
|
0.354
|
0.612
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012000
|
1.000
|
1.000
|
Hsc_gene_6590.t1
|
Hsc_gene_6590.t1
|
— | — |
KAI1702685.1 lecithin retinol acyltransferase domain-containing protein [Ditylenchus destructor]
|
KAI9295229
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-445
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
49894.580
|
5.901
|
-3.000
|
22.697
|
11.461
|
48.090
|
51.910
|
11.461
|
11.236
|
51.461
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
556.451
|
162.096
|
179.317
|
267.053
|
111.852
|
44.697
|
41.427
|
116.011
|
789.350
|
1496.542
|
1193.459
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.583
|
0.684
|
-1.286
|
-1.309
|
— |
1.269
|
-1.345
|
— | — |
-3.221
|
— | — |