Hg_chrom8_TN10mRNA_15675
Organism: Heterodera glycines Gene Locus: chr8:5485431-5489247 Feature type: polypeptideProtein Sequence
Length: 754
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.617 | 0.833 | 0.772 | 0.503 | 1.569 | 1.53 | 0.3 | 1.525 | 1.179 | 1.756 | 0.824 | 0.858 | 1.437 | 0.791 | 1.299 | 1.099 | 0.761 | 0.924 | 1.326 | 1.014 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14810
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.401
|
0.155
|
0.012
|
0.556
|
0.254
|
0.279
|
0.340
|
0.170
|
0.118
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004251
|
2.000
|
1.000
|
Hsc_gene_6589.t1
|
Hsc_gene_6589.t1
|
— |
Q9VS46.2 RINT1-like protein [Drosophila melanogaster]
|
KAI1718891.1 RINT-1 / TIP-1 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006888|GO:0006890|GO:0070939
|
GO:0008150_0.876|GO:0009987_0.840|GO:0005575_0.739|GO:0110165_0.727|GO:0005622_0.702|GO:0016020_0.671|GO:0043226_0.646|GO:0043229_0.631|GO:0016043_0.627|GO:0071840_0.627|GO:0005737_0.615|GO:0043227_0.596|GO:0006996_0.585|GO:0043231_0.569|GO:0007049_0.534|GO:0022402_0.534|GO:0048285_0.532|GO:0000280_0.531|GO:0005886_0.515|GO:0071944_0.515
|
IPR007528+35-745_151-754_247-743+|IPR042042+209-338+|IPR042044+543-668+
|
— |
PF04437+247-743+RINT-1/TIP-1_family
|
— |
PTHR13520+35-745+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-754
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
88305.070
|
6.338
|
-2.500
|
28.515
|
13.395
|
50.398
|
49.602
|
14.854
|
13.660
|
39.655
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
1052.974
|
1736.691
|
1579.519
|
1308.113
|
1146.779
|
1073.156
|
1312.998
|
1419.441
|
339.741
|
760.694
|
580.286
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.366
|
-0.546
|
-0.164
|
-0.222
|
— |
0.300
|
0.298
|
— | — | — | — | — | — |
No JSON data available for plots.