Hg_chrom8_TN10mRNA_15676
Organism: Heterodera glycines Gene Locus: chr8:5491951-5495005 Feature type: polypeptideProtein Sequence
Length: 553
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.736 | 1.598 | 0.855 | 0.187 | 1.115 | 0.696 | 0.452 | 1.447 | 1.045 | 1.588 | 0.466 | 1.064 | 2.16 | 1.321 | 1.55 | 1.24 | 0.623 | 0.849 | 1.252 | 0.638 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14811
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-16
|
0.955
|
0.827
|
0.000
|
0.000
|
0.266
|
0.235
|
0.060
|
0.420
|
0.251
|
0.229
|
0.326
|
0.017
|
0.186
|
0.474
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012001
|
1.000
|
1.000
|
Hsc_gene_6588.t1
|
Hsc_gene_6588.t1
|
— |
Q812F8.1 Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B [Mus musculus]
|
KAI1728783.1 n-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.956|GO:0003674_0.756|GO:0008152_0.713|GO:0044238_0.701|GO:0009987_0.700|GO:0043170_0.680|GO:0003824_0.639|GO:0019538_0.638|GO:0005575_0.603|GO:0016740_0.603|GO:0110165_0.603|GO:1901135_0.600|GO:0009100_0.593|GO:0016757_0.573|GO:0016758_0.572|GO:0008194_0.567|GO:0008375_0.567|GO:0044237_0.564|GO:0009058_0.563|GO:0044249_0.548|GO:0005622_0.543|GO:0016020_0.539|GO:0009059_0.535|GO:0043226_0.512
|
IPR006759+70-381+
|
— |
PF04666+77-365+N-Acetylglucosaminyltransferase-IV_(GnT-IV)_conserved_region
|
— |
PTHR12062+70-381+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-553
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
63612.420
|
6.944
|
4.000
|
24.955
|
14.467
|
47.016
|
52.984
|
13.562
|
11.392
|
47.197
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
755.985
|
456.281
|
846.799
|
342.071
|
457.348
|
801.919
|
916.395
|
1716.826
|
372.161
|
951.697
|
703.324
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
-0.553
|
-1.198
|
0.388
|
0.825
|
0.202
|
0.994
|
-0.764
|
— | — | — | — | — |