Hg_chrom8_TN10mRNA_15679
Organism: Heterodera glycines Gene Locus: chr8:5497369-5499043 Feature type: polypeptideProtein Sequence
Length: 404
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.036 | 1.036 | 0.36 | 0.597 | 0.949 | 1.46 | 0.56 | 1.238 | 0.495 | 0.769 | 0.713 | 1.31 | 1.238 | 1.666 | 0.859 | 2.9 | 0.73 | 0.525 | 0.381 | 1.019 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14812
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.536
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
46-124
|
0.998
|
— | — |
0.000
|
— | — |
0.846
|
0.104
|
0.012
|
0.370
|
0.027
|
0.025
|
0.051
|
0.031
|
0.014
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001427
|
3.000
|
2.000
|
Hsc_gene_6587.t1;Hsc_gene_6587.t2
|
Hsc_gene_6587.t1;Hsc_gene_6587.t2
|
— |
Q93352.3 Homeobox protein ceh-36 [Caenorhabditis elegans]
|
KAI6191339.1 Homeobox domain-containing protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.941|GO:0009987_0.887|GO:0032501_0.802|GO:0065007_0.779|GO:0032502_0.775|GO:0048856_0.775|GO:0050789_0.770|GO:0050794_0.767|GO:0007275_0.754|GO:0048731_0.744|GO:0005575_0.740|GO:0110165_0.732|GO:0043226_0.708|GO:0005622_0.696|GO:0043229_0.693|GO:0008152_0.687|GO:0019222_0.687|GO:0031323_0.687|GO:0044237_0.687|GO:0044238_0.680|GO:0080090_0.680|GO:0043170_0.674|GO:0060255_0.674|GO:0009058_0.673|GO:0009889_0.673|GO:0031326_0.673|GO:0044249_0.673|GO:0006139_0.672|GO:0016070_0.672|GO:0019219_0.672|GO:0051252_0.672|GO:0090304_0.672|GO:0030154_0.671|GO:0048869_0.671|GO:0009059_0.669|GO:0010467_0.669|GO:0010556_0.669|GO:0006351_0.668|GO:0032774_0.668|GO:0034654_0.668|GO:0141187_0.668|GO:0010468_0.665|GO:0007399_0.663|GO:0006355_0.662|GO:2001141_0.662|GO:0006357_0.625|GO:0006366_0.625|GO:0016020_0.622|GO:0003674_0.618|GO:0005488_0.618|GO:0003676_0.610|GO:0097159_0.610|GO:0003677_0.600|GO:0043565_0.600|GO:0003690_0.591|GO:0043227_0.579|GO:1990837_0.571|GO:0043231_0.565|GO:0005634_0.564|GO:0048518_0.563|GO:0048522_0.556|GO:0048513_0.546|GO:0000976_0.539|GO:0001067_0.539|GO:0022008_0.528|GO:0009891_0.521|GO:0009893_0.521|GO:0031325_0.521|GO:0031328_0.521|GO:0010604_0.517|GO:0045935_0.510|GO:0051254_0.510|GO:0043228_0.506|GO:0043232_0.506|GO:0000977_0.503
|
IPR001356+101-161_103-165_104-160_104-162+|IPR009057+97-167+|IPR017970+136-159+
|
SM00389+103-165+
|
PF00046+104-160+Homeodomain
|
— |
PTHR45793+78-362+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
143-274;386-404
|
2.000
|
1-142;275-385
|
2dmu_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
43591.100
|
8.546
|
10.000
|
19.059
|
10.891
|
53.960
|
46.040
|
11.386
|
7.673
|
58.663
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
590.613
|
168.992
|
189.464
|
94.088
|
35.978
|
16.572
|
74.208
|
53.159
|
274.109
|
2141.177
|
1341.005
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.983
|
-0.899
|
-1.415
|
-1.105
|
2.171
|
1.579
|
0.622
|
— | — |
-3.034
|
— | — |
No JSON data available for plots.