SCN Proteipedia

Hg_chrom8_TN10mRNA_15680

Organism: Heterodera glycines Gene Locus: chr8:5500175-5501748 Feature type: polypeptide

Protein Sequence

Length: 302

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.616	0.77	0.963	0.343	1.269	1.868	0.394	1.656	1.177	1.745	0.401	1.363	1.288	0.573	2.162	1.325	0.489	1.405	0.0	0.195	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14813	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	lysosome_vacuole\|golgi_apparatus	—	—	—	—	16-37	0.991	—	—	0.000	—	—	0.133	0.030	0.001	0.226	0.412	0.632	0.657	0.008	0.421	0.013

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012002	1.000	1.000	Hsc_gene_6586.t1	Hsc_gene_6586.t1	—	Q6F3B4.1 Syntaxin-121 [Oryza sativa Japonica Group]	KAI1707940.1 syntaxin domain-containing protein [Ditylenchus destructor]	No	-0.080

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020\|GO:0016192	GO:0005575_0.919\|GO:0110165_0.919\|GO:0008150_0.883\|GO:0016020_0.883\|GO:0009987_0.828\|GO:0005886_0.809\|GO:0071944_0.809\|GO:0005622_0.704\|GO:0051179_0.673\|GO:0065007_0.660\|GO:0050789_0.642\|GO:0043226_0.618\|GO:0051234_0.617\|GO:0006810_0.616\|GO:0016043_0.613\|GO:0071840_0.613\|GO:0043227_0.587\|GO:0043229_0.586\|GO:0005737_0.566\|GO:0043231_0.555\|GO:0003674_0.552\|GO:0051641_0.544\|GO:0050794_0.536\|GO:0005488_0.520\|GO:0005515_0.520\|GO:0061024_0.518\|GO:0032501_0.505	IPR000727+192-259_197-259_234-284+\|IPR006011+42-232+\|IPR010989+42-252+\|IPR045242+47-277+	SM00397+192-259+	PF00804+42-232+Syntaxin\|PF05739+234-284+SNARE_domain	—	PTHR19957+47-277+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-53	1.000	54-302	9pfg_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.601	34727.840	7.919	6.000	29.470	8.609	52.318	47.682	16.556	12.914	42.715

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	1006.546	1150.016	894.904	348.982	180.082	128.398	431.213	244.028	1254.658	2196.036	1792.588

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.593	-1.857	-1.249	-0.984	-0.476	1.759	0.823	0.964	—	—	-3.535	—	—

No JSON data available for plots.

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