Hg_chrom8_TN10mRNA_15684
Organism: Heterodera glycines Gene Locus: chr8:5511579-5513717 Feature type: polypeptideProtein Sequence
Length: 534
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.893 | 1.132 | 1.158 | 0.646 | 1.155 | 1.2 | 0.58 | 1.124 | 1.29 | 1.012 | 1.05 | 1.432 | 1.457 | 1.044 | 1.185 | 0.883 | 0.829 | 1.021 | 1.152 | 0.551 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14817
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.921
|
0.060
|
0.004
|
0.295
|
0.036
|
0.075
|
0.021
|
0.009
|
0.052
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012005
|
1.000
|
1.000
|
Hsc_gene_6582.t1
|
Hsc_gene_6582.t1
|
— |
Q13112.1 Chromatin assembly factor 1 subunit B [Homo sapiens]
|
KAI1707042.1 chromatin assembly factor 1 subunit B [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006335
|
GO:0008150_0.894|GO:0005575_0.878|GO:0009987_0.834|GO:0110165_0.783|GO:0005622_0.707|GO:0071840_0.673|GO:0016043_0.659|GO:0043226_0.644|GO:0043229_0.629|GO:0016020_0.624|GO:0043227_0.536|GO:0006325_0.532|GO:0003674_0.527|GO:0043231_0.511
|
IPR001680+156-195_159-194_163-197_233-271_239-280_274-313_455-494+|IPR015943+149-509+|IPR024977+250-321+|IPR036322+40-494+|IPR045145+3-504+
|
SM00320+156-195_233-271_274-313_455-494+
|
PF00400+159-194+WD_domain,_G-beta_repeat|PF12894+250-321+Anaphase-promoting_complex_subunit_4_WD40_domain
|
— |
PTHR15271+3-504+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
72-159;531-534
|
2.000
|
1-71;160-530
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.629
|
60507.990
|
6.908
|
3.000
|
28.277
|
10.861
|
49.064
|
50.936
|
14.981
|
13.296
|
49.064
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
905.835
|
378.763
|
693.686
|
1001.784
|
1435.214
|
1117.603
|
1805.048
|
746.609
|
862.415
|
624.203
|
726.294
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
1.266
|
0.639
|
0.486
|
-0.345
|
0.701
|
-0.689
|
1.416
|
— | — | — | — | — |
No JSON data available for plots.