SCN Proteipedia

Hg_chrom8_TN10mRNA_15685

Organism: Heterodera glycines Gene Locus: chr8:5513737-5515704 Feature type: polypeptide

Protein Sequence

Length: 376

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.433	1.237	0.919	1.192	0.931	1.159	0.792	2.128	1.123	1.294	0.927	0.626	1.034	1.125	1.14	1.178	0.828	0.887	1.637	0.939	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14818	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-pJ2_J3_J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.744	0.146	0.003	0.483	0.084	0.172	0.189	0.003	0.257	0.013

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012006	1.000	1.000	Hsc_gene_6581.t1	Hsc_gene_6581.t1	—	Q02330.2 Dwarfin sma-2 [Caenorhabditis elegans]	KAI6227599.1 Mothers against decapentaplegic-like protein [Aphelenchoides fujianensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005667\|GO:0006355	GO:0008150_0.890\|GO:0009987_0.796\|GO:0065007_0.787\|GO:0050789_0.778\|GO:0050794_0.761\|GO:0005575_0.754\|GO:0110165_0.744\|GO:0032501_0.708\|GO:0005622_0.702\|GO:0032502_0.689\|GO:0048856_0.669\|GO:0050896_0.649\|GO:0008152_0.639\|GO:0048518_0.620\|GO:0044238_0.619\|GO:0007275_0.614\|GO:0043170_0.614\|GO:0016020_0.613\|GO:0048522_0.613\|GO:0043226_0.590\|GO:0019222_0.587\|GO:0051716_0.586\|GO:0003674_0.585\|GO:0043229_0.583\|GO:0044237_0.580\|GO:0009058_0.578\|GO:0060255_0.574\|GO:0080090_0.568\|GO:0044249_0.566\|GO:0043227_0.562\|GO:0043231_0.562\|GO:0009059_0.558\|GO:0023052_0.555\|GO:0007154_0.554\|GO:0010467_0.551\|GO:0031323_0.549\|GO:0006139_0.541\|GO:0007165_0.541\|GO:0034654_0.530\|GO:0009889_0.529\|GO:0010556_0.529\|GO:0031326_0.529\|GO:0010468_0.525\|GO:0005488_0.524\|GO:0090304_0.522\|GO:0016070_0.520\|GO:0141187_0.517\|GO:0032774_0.512\|GO:0048519_0.505\|GO:0019219_0.502	IPR001132+171-349_173-372+\|IPR003619+21-133_27-129+\|IPR008984+160-361+\|IPR013019+8-135+\|IPR013790+170-362+\|IPR017855+165-370+\|IPR036578+2-134_13-129+	SM00523+21-133+\|SM00524+171-349+	PF03165+27-129+MH1_domain\|PF03166+171-349+MH2_domain	—	PTHR13703+170-362+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-376	1khu_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.855	42755.560	8.065	12.000	26.596	13.298	49.734	50.266	15.957	10.638	49.202

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	yellowgreen	800.532	528.391	745.441	741.781	817.970	885.394	741.958	848.122	529.510	1114.299	863.675

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.266	0.352	—	0.109	—	-0.245	—	—	—	—	—	—	—

No JSON data available for plots.

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