SCN Proteipedia

Hg_chrom8_TN10mRNA_15686

Organism: Heterodera glycines Gene Locus: chr8:5515967-5518372 Feature type: polypeptide

Protein Sequence

Length: 614

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.871	1.136	0.977	0.73	0.923	1.128	0.62	1.221	1.086	1.343	1.308	1.437	1.312	1.065	1.064	0.582	0.988	0.962	0.501	1.198	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14819	—	—	2.000	2.000	2.000	2.000	2.000	2.000	2.000	2.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	KRRK	—	—	—	—	—	—	0.000	—	—	0.616	0.173	0.014	0.679	0.081	0.239	0.130	0.018	0.171	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004761	2.000	1.000	Hsc_gene_6580.t1	Hsc_gene_6575.t1;Hsc_gene_6580.t1	—	P70032.1 Serine/threonine-protein kinase PLK1 [Xenopus laevis]	KAF7624789.1 Serine/threonine-protein kinase PLK [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005515\|GO:0005524\|GO:0006468	GO:0008150_0.940\|GO:0009987_0.902\|GO:0005575_0.900\|GO:0110165_0.896\|GO:0005622_0.831\|GO:0003674_0.787\|GO:0003824_0.787\|GO:0016740_0.787\|GO:0140096_0.779\|GO:0016772_0.776\|GO:0016773_0.774\|GO:0004672_0.773\|GO:0016301_0.773\|GO:0071840_0.767\|GO:0016043_0.763\|GO:0065007_0.760\|GO:0050789_0.757\|GO:0050794_0.739\|GO:0004674_0.699\|GO:0006996_0.680\|GO:0043226_0.655\|GO:0016020_0.606\|GO:0007049_0.597\|GO:0043229_0.595\|GO:0022402_0.589\|GO:0000280_0.560\|GO:0048285_0.560\|GO:0008152_0.559\|GO:0019538_0.546\|GO:0043170_0.546\|GO:0044238_0.546\|GO:0050896_0.534\|GO:0048518_0.527\|GO:0051716_0.518\|GO:0007154_0.515\|GO:0044237_0.514\|GO:0005737_0.513\|GO:0023052_0.512\|GO:0006793_0.510\|GO:0006796_0.510\|GO:0043228_0.506\|GO:0043232_0.506\|GO:0043412_0.502	IPR000719+27-279_28-279+\|IPR000959+411-489_420-477_511-593_518-581+\|IPR008271+146-158+\|IPR011009+18-301+\|IPR017441+33-66+\|IPR033695+512-591+\|IPR033701+408-495+\|IPR036947+384-591_413-509+	SM00220+27-279+	PF00069+28-279+Protein_kinase_domain\|PF00659+420-477_518-581+POLO_box_duplicated_region	G3DSA:1.10.510.10:FF:000727+110-299+Serine/threonine-protein_kinase_PLK\|G3DSA:3.30.1120.30:FF:000001+413-509+Serine/threonine-protein_kinase_PLK\|G3DSA:3.30.200.20:FF:000284+22-110+Serine/threonine-protein_kinase_PLK	PTHR24345+15-591+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	602-614	1.000	1-601	3d5w_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.788	69816.690	9.352	25.500	27.199	11.889	46.580	53.420	16.287	10.912	47.068

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	darkred	296.811	81.459	53.749	264.702	490.637	403.243	600.893	105.789	18.641	534.389	313.354

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.830	1.564	2.410	0.859	-0.268	0.586	-2.044	2.652	-4.973	—	—	—	—

No JSON data available for plots.

Back to Browser