Hg_chrom8_TN10mRNA_15687
Organism: Heterodera glycines Gene Locus: chr8:5518879-5519714 Feature type: polypeptideProtein Sequence
Length: 164
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.567 | 1.276 | 0.998 | 2.733 | 0.813 | 1.251 | 0.581 | 0.915 | 1.084 | 1.154 | 0.277 | 1.076 | 1.524 | 1.407 | 1.742 | 0.958 | 0.7 | 0.831 | 1.407 | 0.897 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14820
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-22
|
0.999
|
1.000
|
0.000
|
0.000
|
0.168
|
0.367
|
0.036
|
0.180
|
0.157
|
0.052
|
0.063
|
0.009
|
0.291
|
0.940
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012007
|
1.000
|
1.000
|
Hsc_gene_6576.t1
|
Hsc_gene_6576.t1
|
— |
G5EGH7.1 Protein lon-8 [Caenorhabditis elegans]
|
KAI1723279.1 protein lon-8 [Ditylenchus destructor]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.945|GO:0065007_0.906|GO:0050789_0.901|GO:0032501_0.843|GO:0032502_0.808|GO:0048856_0.808|GO:0007275_0.782|GO:0048519_0.778|GO:0051239_0.754|GO:0050793_0.724|GO:0009653_0.713|GO:0051241_0.705|GO:0040007_0.703|GO:0048589_0.696|GO:0022414_0.695|GO:0051093_0.691|GO:0003006_0.688|GO:0040008_0.682|GO:0007548_0.680|GO:0045926_0.677|GO:0048638_0.677|GO:0046661_0.674|GO:0048640_0.674|GO:0035264_0.670|GO:0040014_0.670|GO:0040015_0.670|GO:0045138_0.670|GO:0090598_0.670
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
164-164
|
1.000
|
1-163
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
18792.520
|
7.036
|
1.500
|
22.561
|
12.195
|
43.902
|
56.098
|
12.195
|
10.366
|
52.439
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
422.128
|
217.205
|
27.515
|
22.272
|
805.580
|
2163.791
|
242.453
|
526.522
|
1.028
|
344.039
|
197.034
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.209
|
-3.424
|
— |
5.145
|
1.442
|
-3.149
|
-2.157
|
-0.972
|
-8.174
|
4.338
|
— | — | — |