Hg_chrom8_TN10mRNA_15688
Organism: Heterodera glycines Gene Locus: chr8:5520542-5523060 Feature type: polypeptideProtein Sequence
Length: 494
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.871 | 0.989 | 0.736 | 0.489 | 1.012 | 1.298 | 0.554 | 0.911 | 1.26 | 1.231 | 0.736 | 1.191 | 1.968 | 1.285 | 1.074 | 1.215 | 0.962 | 0.705 | 1.869 | 0.893 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14821
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_6577
|
— |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
nucleus
|
RKKESEENQSKKNGR
|
— | — | — | — |
1-29
|
0.881
|
1.000
|
0.000
|
0.000
|
0.037
|
0.097
|
0.015
|
0.128
|
0.194
|
0.248
|
0.304
|
0.223
|
0.750
|
0.391
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012008
|
1.000
|
1.000
|
Hsc_gene_6577.t1
|
Hsc_gene_6577.t1
|
— |
Q19076.1 Intestinal acid phosphatase [Caenorhabditis elegans]
|
KAI1727298.1 histidine phosphatase superfamily (branch 2) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.801|GO:0110165_0.798|GO:0008150_0.734|GO:0016020_0.693|GO:0009987_0.683|GO:0003674_0.596|GO:0005622_0.578|GO:0043226_0.548|GO:0043229_0.522|GO:0043227_0.504
|
IPR000560+51-397_52-396+|IPR029033+46-435_49-444+|IPR033379+52-66+|IPR050645+14-443+
|
— |
PF00328+52-396+Histidine_phosphatase_superfamily_(branch_2)
|
— |
PTHR11567+14-443+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-494
|
4jod_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
56308.280
|
7.408
|
4.500
|
22.065
|
14.372
|
45.749
|
54.251
|
11.943
|
10.121
|
47.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
3522.930
|
159.671
|
914.063
|
920.155
|
430.848
|
183.872
|
212.607
|
1192.242
|
1286.218
|
12943.108
|
7947.298
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.288
|
2.390
|
0.118
|
-1.125
|
-1.215
|
— |
2.589
|
-2.344
|
-3.429
|
— |
-4.841
|
— | — |