Hg_chrom8_TN10mRNA_15692
Organism: Heterodera glycines Gene Locus: chr8:5531986-5533557 Feature type: polypeptideProtein Sequence
Length: 446
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.913 | 0.73 | 0.775 | 1.237 | 1.308 | 0.862 | 1.441 | 1.009 | 1.345 | 1.242 | 0.849 | 1.583 | 1.059 | 0.819 | 1.373 | 0.448 | 0.809 | 0.849 | 1.207 | 0.659 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14825
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.403
|
0.448
|
0.017
|
0.655
|
0.323
|
0.306
|
0.174
|
0.025
|
0.070
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012011
|
1.000
|
1.000
|
Hsc_gene_6574.t1
|
Hsc_gene_6574.t1
|
— |
Q3UEG6.1 Alanine--glyoxylate aminotransferase 2, mitochondrial [Mus musculus]
|
PIO71350.1 aminotransferase, class III [Teladorsagia circumcincta]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008483|GO:0030170
|
GO:0005575_0.684|GO:0003674_0.683|GO:0110165_0.677|GO:0008150_0.650|GO:0005622_0.581|GO:0005737_0.565|GO:0016020_0.525|GO:0003824_0.524|GO:0009987_0.513
|
IPR005814+16-122_18-439_117-442+|IPR015421+53-338+|IPR015422+18-439+|IPR015424+13-441+
|
— |
PF00202+18-439+Aminotransferase_class-III
|
— |
PTHR45688+4-439+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-446
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
49059.530
|
7.471
|
5.500
|
26.457
|
9.641
|
41.031
|
58.969
|
14.350
|
12.108
|
48.879
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
216.004
|
71.659
|
37.028
|
455.468
|
463.585
|
202.201
|
773.564
|
153.329
|
1.382
|
135.168
|
77.831
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.179
|
2.532
|
3.728
|
— |
-1.183
|
1.947
|
— |
2.483
|
-6.843
|
8.698
|
— | — | — |
No JSON data available for plots.