Hg_chrom8_TN10mRNA_15694
Organism: Heterodera glycines Gene Locus: chr8:5540208-5542255 Feature type: polypeptideProtein Sequence
Length: 373
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 1.06 | 0.829 | 0.462 | 1.787 | 1.237 | 0.223 | 0.938 | 1.132 | 1.196 | 1.462 | 0.946 | 2.011 | 0.876 | 0.93 | 1.034 | 1.055 | 0.691 | 1.031 | 0.631 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14827
|
— | — |
2.111
|
1.000
|
2.000
|
2.000
|
1.000
|
3.000
|
4.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PPAKRRM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.802
|
0.219
|
0.029
|
0.345
|
0.091
|
0.140
|
0.109
|
0.024
|
0.041
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000117
|
10.000
|
4.000
|
Hsc_gene_14127.t1;Hsc_gene_15599.t1;Hsc_gene_20567.t1;Hsc_gene_23071.t1
|
Hsc_gene_14127.t1;Hsc_gene_20567.t1
|
— | — |
KAH7725251.1 zinc finger BED domain-containing protein 4-like protein [Aphelenchus avenae]
|
No
|
-0.520
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
— |
IPR008906+293-365+|IPR012337+110-367+|IPR052035+104-371+
|
— |
PF05699+293-365+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+104-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-373
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
43373.370
|
6.408
|
-0.500
|
31.367
|
12.601
|
54.424
|
45.576
|
16.086
|
15.282
|
42.091
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
59.985
|
12.330
|
38.256
|
22.186
|
28.429
|
25.315
|
12.375
|
34.916
|
20.753
|
181.694
|
112.719
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.398
|
0.711
|
-0.673
|
— | — |
-1.022
|
— |
-1.355
|
— | — | — | — | — |
No JSON data available for plots.