Hg_chrom8_TN10mRNA_15696
Organism: Heterodera glycines Gene Locus: chr8:5544510-5546449 Feature type: polypeptideProtein Sequence
Length: 242
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.393 | 0.961 | 1.127 | 1.282 | 0.758 | 0.636 | 1.082 | 1.033 | 1.469 | 1.229 | 0.438 | 0.486 | 0.574 | 0.477 | 1.518 | 1.181 | 0.881 | 1.377 | 0.636 | 0.243 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14828
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — |
48-72
|
0.937
|
— | — |
0.000
|
— | — |
0.572
|
0.303
|
0.104
|
0.547
|
0.185
|
0.233
|
0.223
|
0.200
|
0.052
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004762
|
3.000
|
0.000
|
0.000
|
— | — |
O62106.1 Eukaryotic translation initiation factor 6 [Caenorhabditis elegans]
|
KAH7698566.1 Eukaryotic translation initiation factor 6 [Aphelenchus avenae]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042256|GO:0043022
|
GO:0005575_0.778|GO:0110165_0.769|GO:0008150_0.756|GO:0009987_0.681|GO:0005622_0.680|GO:0016020_0.680|GO:0043226_0.628|GO:0043229_0.610|GO:0043227_0.597|GO:0043231_0.582|GO:0005737_0.558
|
IPR002769+1-242_4-201_5-127_180-241+
|
SM00654+4-201+
|
PF01912+5-127+eIF-6_family
|
— |
PTHR10784+180-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-242
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
25530.060
|
6.910
|
1.500
|
23.140
|
5.785
|
43.388
|
56.612
|
12.397
|
10.744
|
60.331
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
809.226
|
2308.768
|
1477.667
|
1015.082
|
801.814
|
768.657
|
754.015
|
1001.048
|
251.308
|
304.239
|
281.555
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.872
|
-1.323
|
-0.434
|
-0.372
|
— | — |
0.277
|
-0.267
|
— | — | — | — | — |
No JSON data available for plots.