Hg_chrom8_TN10mRNA_15699
Organism: Heterodera glycines Gene Locus: chr8:5556662-5559037 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.355 | 0.753 | 1.118 | 0.67 | 0.863 | 0.913 | 0.539 | 0.971 | 0.575 | 1.268 | 0.49 | 1.523 | 1.438 | 1.307 | 1.651 | 1.387 | 0.902 | 1.079 | 0.0 | 0.476 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14831
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.395
|
0.174
|
0.065
|
0.556
|
0.057
|
0.092
|
0.122
|
0.285
|
0.164
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000125
|
12.000
|
2.000
|
Hsc_gene_6518.t1;Hsc_gene_6520.t1
|
Hsc_gene_6518.t1
|
— | — |
KAI1717806.1 tetratricopeptide repeat protein 14 like protein [Ditylenchus destructor]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.942|GO:0009987_0.885|GO:0065007_0.870|GO:0050789_0.854|GO:0050794_0.834|GO:0008152_0.773|GO:0043170_0.761|GO:0044237_0.758|GO:0009058_0.754|GO:0019222_0.748|GO:0031323_0.745|GO:0048519_0.745|GO:0044249_0.744|GO:0009059_0.736|GO:0060255_0.736|GO:0010467_0.732|GO:0048523_0.727|GO:0009889_0.721|GO:0010556_0.721|GO:0031326_0.721|GO:0010468_0.720|GO:0009892_0.694|GO:0010605_0.691|GO:0031324_0.688|GO:0009890_0.685|GO:0010558_0.685|GO:0031327_0.685|GO:0010629_0.677|GO:0010608_0.676|GO:0016441_0.670|GO:0031047_0.670|GO:0035194_0.670|GO:0035195_0.670
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
273-309
|
1.000
|
1-272
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
33765.340
|
7.328
|
3.000
|
24.595
|
8.738
|
46.602
|
53.398
|
13.269
|
11.327
|
56.634
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
712.814
|
1855.457
|
1458.525
|
1146.107
|
913.502
|
767.237
|
692.518
|
1143.197
|
151.212
|
13.950
|
72.777
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.577
|
-0.832
|
-0.239
|
-0.359
|
-0.238
|
— |
0.470
|
-0.581
|
— | — |
7.288
|
— | — |
No JSON data available for plots.